RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 ZNF850A8MQ14 1090 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 E9PI62 339 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 GMDSO60547 372 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 HTR1AP08908 422 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 INHBBP09529 407 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 FAHP16930 419 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 MYL12AP19105 171 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 CD200P41217 278 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 MAP2K3P46734 347 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 NANOS3P60323 173 aaKnown RBP12.12□□□□□ -0.47
USP3-205ENST00000557884 RIPPLY1Q0D2K3 151 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 ST3GAL4Q11206 333 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 MAB21L1Q13394 359 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 RDH10Q8IZV5 341 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 SYS1Q8N2H4 156 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 STX19Q8N4C7 294 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 ZNF540Q8NDQ6 660 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 SEMA6DQ8NFY4 1073 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 OR8S1Q8NH09 359 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 ZNF420Q8TAQ5 688 aaPredicted RBP12.12□□□□□ -0.47
USP3-205ENST00000557884 MYCBPQ99417 103 aaPredicted RBP12.12□□□□□ -0.47
USP3-205ENST00000557884 SMR3AQ99954 134 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 JAM3Q9BX67 310 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 ANKRD60Q9BZ19 345 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 GCM1Q9NP62 436 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 PLCXD1Q9NUJ7 323 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 UFSP2Q9NUQ7 469 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 CNOT2Q9NZN8 540 aaKnown RBP12.12□□□□□ -0.47
USP3-205ENST00000557884 FRRS1LQ9P0K9 344 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 PSORS1C1Q9UIG5 152 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 PIGLQ9Y2B2 252 aa12.12□□□□□ -0.47
USP3-205ENST00000557884 EXOSC1Q9Y3B2 195 aaKnown RBP12.12□□□□□ -0.47
USP3-205ENST00000557884 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.11□□□□□ -0.47
USP3-205ENST00000557884 LOC107986453A0A1B0GWG9 222 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 LRP5LA4QPB2 252 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 CLDN25C9JDP6 229 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 SLC1A7O00341 560 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 WNT9BO14905 357 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 SYT7O43581 403 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 DHRS3O75911 302 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 GRPP07492 148 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 PIPP12273 146 aaPredicted RBP12.11□□□□□ -0.47
USP3-205ENST00000557884 USF1P22415 310 aaPredicted RBP12.11□□□□□ -0.47
USP3-205ENST00000557884 PMELP40967 661 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 TMEM33P57088 247 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 PRDX4Q13162 271 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 MPPED2Q15777 294 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 DMRTC1Q5HYR2 192 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 OR2G6Q5TZ20 316 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 DOK3Q7L591 496 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 FTMTQ8N4E7 242 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 TMEM106BQ9NUM4 274 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 CHCHD3Q9NX63 227 aaKnown RBP12.11□□□□□ -0.47
USP3-205ENST00000557884 PCDHGB5Q9Y5G0 923 aa12.11□□□□□ -0.47
USP3-205ENST00000557884 ZNF816-ZNF321PA0A0X1KG74 233 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 LOC100289279A0A1B0GTE1 492 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 ANXA2P2A6NMY6 339 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 PTGES3LE9PB15 166 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 LMX1BO60663 402 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 MTRF1O75570 445 aaKnown RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 ZNF205O95201 554 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 CYB5R3P00387 301 aaPredicted RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 CST4P01036 141 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 UBCP0CG48 685 aaKnown RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 ATP6V1B1P15313 513 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 C21orf33P30042 268 aaPredicted RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 GBX2P52951 348 aaPredicted RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 LOXL1Q08397 574 aaPredicted RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 ALKBH1Q13686 389 aaKnown RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 SNCBQ16143 134 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 CEP78Q5JTW2 689 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 FDX2Q6P4F2 183 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 TMPRSS11AQ6ZMR5 421 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 KLBQ86Z14 1044 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 ZDHHC23Q8IYP9 409 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 KLHL36Q8N4N3 616 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 SPERTQ8NA61 448 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 OR14K1Q8NGZ2 314 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 SGCDQ92629 289 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 ZNF184Q99676 751 aaPredicted RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 MICU1Q9BPX6 476 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 FGF23Q9GZV9 251 aaPredicted RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 GSX1Q9H4S2 264 aaPredicted RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 ENPP5Q9UJA9 477 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 RAB26Q9ULW5 256 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 CAB39Q9Y376 341 aaPredicted RBP12.1□□□□□ -0.47
USP3-205ENST00000557884 WIPI2Q9Y4P8 454 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 V9GYS6 101 aa12.1□□□□□ -0.47
USP3-205ENST00000557884 MTORP42345 2549 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 ISPDA4D126 451 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 A6NLC8 198 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 OR4C45A6NMZ5 311 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 FOSL1P15407 271 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 CCL1P22362 96 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 GATA4P43694 442 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 GTF2A1P52655 376 aaPredicted RBP12.09□□□□□ -0.47
USP3-205ENST00000557884 HOXA4Q00056 320 aaPredicted RBP12.09□□□□□ -0.47
USP3-205ENST00000557884 SLC3A1Q07837 685 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 MED21Q13503 144 aa12.09□□□□□ -0.47
USP3-205ENST00000557884 PLCXD3Q63HM9 321 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms