RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SEC23BQ15437 767 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 C2orf68Q2NKX9 166 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 OTPQ5XKR4 325 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 ZNF620Q6ZNG0 422 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 CFAP77Q6ZQR2 320 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 CPOQ8IVL8 374 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 PDZD9Q8IXQ8 264 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 C11orf44Q8N8P7 122 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 KIRREL1Q96J84 757 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 TSSK2Q96PF2 358 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 ATF6BQ99941 703 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 NUDT16L1Q9BRJ7 211 aaKnown RBP8.27□□□□□ -1.09
SCFD1-220ENST00000556486 PCGF1Q9BSM1 259 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 EFCAB1Q9HAE3 211 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 DCAF13Q9NV06 445 aaKnown RBP8.27□□□□□ -1.09
SCFD1-220ENST00000556486 ARGLU1Q9NWB6 273 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-220ENST00000556486 KCNG2Q9UJ96 466 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 B9D1Q9UPM9 204 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 POLR1DQ9Y2S0 133 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 FAM32AQ9Y421 112 aaKnown RBP8.27□□□□□ -1.09
SCFD1-220ENST00000556486 POMT1Q9Y6A1 747 aa8.27□□□□□ -1.09
SCFD1-220ENST00000556486 UNC119BA6NIH7 251 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 NDUFA2O43678 99 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 GMDSO60547 372 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 FAM20BO75063 409 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 CLPXO76031 633 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 SEMG1P04279 462 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 HLA-DPB1P04440 258 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 IRF2P14316 349 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 MMP9P14780 707 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 UCP3P55916 312 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 MXRA7P84157 204 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 KCNJ8Q15842 424 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 MEP1BQ16820 701 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 RFX4Q33E94 735 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 SLC36A3Q495N2 470 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 FGD3Q5JSP0 725 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 FAM201AQ5SY85 155 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 GPR157Q5UAW9 335 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 CORO6Q6QEF8 472 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 CCBE1Q6UXH8 406 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-220ENST00000556486 Q6ZSV7 163 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 BHLHE23Q8NDY6 225 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 C19orf18Q8NEA5 215 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 OR11L1Q8NGX0 322 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 CFHR4Q92496 578 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 FAM162AQ96A26 154 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 SPSB4Q96A44 273 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 FAM71F1Q96KD3 344 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-220ENST00000556486 NMNAT3Q96T66 252 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 KCTD14Q9BQ13 255 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-220ENST00000556486 TOR3AQ9H497 397 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 RERGLQ9H628 205 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 GORASP2Q9H8Y8 452 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 TRIM36Q9NQ86 728 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 SLC23A1Q9UHI7 598 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 SAMD4AQ9UPU9 718 aaKnown RBP8.26□□□□□ -1.09
SCFD1-220ENST00000556486 AURKCQ9UQB9 309 aa8.26□□□□□ -1.09
SCFD1-220ENST00000556486 ZNF879B4DU55 563 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 LGALS8O00214 317 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 P2RY10O00398 339 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 CCDC22O60826 627 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 RENP00797 406 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 GRPP07492 148 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 HIST1H1CP16403 213 aaKnown RBP8.25□□□□□ -1.09
SCFD1-220ENST00000556486 SLC6A6P31641 620 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 CFHR2P36980 270 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 LOXL3P58215 753 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 SMIM11AP58511 58 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 HOXA4Q00056 320 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-220ENST00000556486 TRAP1Q12931 704 aaKnown RBP8.25□□□□□ -1.09
SCFD1-220ENST00000556486 MPPED2Q15777 294 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 VAX1Q5SQQ9 334 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 LYPD2Q6UXB3 125 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 PGAP1Q75T13 922 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 LYG1Q8N1E2 194 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 FANK1Q8TC84 345 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 SSMEM1Q8WWF3 244 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 ERMAPQ96PL5 475 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-220ENST00000556486 DDOQ99489 341 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 PITX2Q99697 317 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 OR52D1Q9H346 318 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 WDR76Q9H967 626 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 SPAG4Q9NPE6 437 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 HEYLQ9NQ87 328 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-220ENST00000556486 MRPL22Q9NWU5 206 aaKnown RBP8.25□□□□□ -1.09
SCFD1-220ENST00000556486 MRPL15Q9P015 296 aaKnown RBP8.25□□□□□ -1.09
SCFD1-220ENST00000556486 RNF7Q9UBF6 113 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 CTSZQ9UBR2 303 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 TENM3Q9P273 2699 aa8.25□□□□□ -1.09
SCFD1-220ENST00000556486 A0A0U1RQK1 487 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 CENPVL3A0A0U1RRI6 287 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 OR6C68A6NDL8 312 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 CD300LBA8K4G0 201 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 F5H5K5 113 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 M0R135 149 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 TOX4O94842 621 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 NCK1P16333 377 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 GSSP48637 474 aa8.24□□□□□ -1.09
SCFD1-220ENST00000556486 NUDT2P50583 147 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms