RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CAV2P51636 162 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 ATP1B3P54709 279 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 PDZK1IP1Q13113 114 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 OR2F1Q13607 317 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 PLCXD3Q63HM9 321 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 ACOT7LQ6ZUV0 252 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 SEH1LQ96EE3 360 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 NECAB3Q96P71 396 aaPredicted RBP13.2□□□□□ -0.3
CUX1-215ENST00000556210 PAPOLGQ9BWT3 736 aaKnown RBP13.2□□□□□ -0.3
CUX1-215ENST00000556210 PIPOXQ9P0Z9 390 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 CSAG2Q9Y5P2 127 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 ANKUB1A6NFN9 424 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 C1orf196B1AJZ1 125 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 SLC35A1P78382 337 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 C2orf68Q2NKX9 166 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 PAN3Q58A45 887 aaKnown RBP13.2□□□□□ -0.3
CUX1-215ENST00000556210 WIPI1Q5MNZ9 446 aaPredicted RBP13.2□□□□□ -0.3
CUX1-215ENST00000556210 RHBDD2Q6NTF9 364 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 OVCH2Q7RTZ1 564 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 SULF2Q8IWU5 870 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 OR1S2Q8NGQ3 325 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 MFSD8Q8NHS3 518 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 CD300LFQ8TDQ1 290 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 CMSS1Q9BQ75 279 aaKnown RBP13.2□□□□□ -0.3
CUX1-215ENST00000556210 RPS10P5Q9NQ39 176 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 KCNIP3Q9Y2W7 256 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 MEMO1Q9Y316 297 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 LRRK1Q38SD2 2015 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 M0R135 149 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 CFHR1Q03591 330 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 RBM39Q14498 530 aaKnown RBP13.2□□□□□ -0.3
CUX1-215ENST00000556210 PCK2Q16822 640 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 ABHD17BQ5VST6 288 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 TMEM200AQ86VY9 491 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 ZNF100Q8IYN0 542 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 ZNF799Q96GE5 643 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 PADI1Q9ULC6 663 aa13.2□□□□□ -0.3
CUX1-215ENST00000556210 RAD51DO75771 328 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 GLP1RP43220 463 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 CLEC9AQ6UXN8 241 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 ZNF565Q8N9K5 539 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 CADM4Q8NFZ8 388 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 UBALD1Q8TB05 177 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 GFI1Q99684 422 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 ZCCHC4Q9H5U6 513 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 TSPAN2O60636 221 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 EPHA1P21709 976 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 PEA15Q15121 130 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 THEM4Q5T1C6 240 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 TMEM104Q8NE00 496 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 SCGB3A2Q96PL1 93 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 ADAT1Q9BUB4 502 aaKnown RBP13.19□□□□□ -0.3
CUX1-215ENST00000556210 SLC5A7Q9GZV3 580 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 TXNL1O43396 289 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 IGKV3-11P04433 115 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 CASRP41180 1078 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 RPS4XP62701 263 aaKnown RBP13.19□□□□□ -0.3
CUX1-215ENST00000556210 OGFOD3Q6PK18 319 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 ZNF813Q6ZN06 617 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 RABEPKQ7Z6M1 372 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 CBLN2Q8IUK8 224 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 OR6K3Q8NGY3 331 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 CCNL2Q96S94 520 aaPredicted RBP13.19□□□□□ -0.3
CUX1-215ENST00000556210 SHARPINQ9H0F6 387 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 C12orf49Q9H741 205 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 ZNF275Q9NSD4 429 aaPredicted RBP13.19□□□□□ -0.3
CUX1-215ENST00000556210 ZNF407Q9C0G0 2248 aa13.19□□□□□ -0.3
CUX1-215ENST00000556210 A0A1W2PR77 199 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 CNOT4O95628 575 aaKnown RBP13.18□□□□□ -0.3
CUX1-215ENST00000556210 NAT2P11245 290 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 AVPI1Q5T686 147 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 GJC3Q8NFK1 279 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 OR56B1Q8NGI3 324 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 NMNAT2Q9BZQ4 307 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 ADAM19Q9H013 955 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 CRLF2Q9HC73 371 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 EXOSC3Q9NQT5 275 aaKnown RBP13.18□□□□□ -0.3
CUX1-215ENST00000556210 PRR19A6NJB7 356 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 CCL3P10147 92 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 DUSP3P51452 185 aaPredicted RBP13.18□□□□□ -0.3
CUX1-215ENST00000556210 GGTLC2Q14390 218 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 IAH1Q2TAA2 248 aaPredicted RBP13.18□□□□□ -0.3
CUX1-215ENST00000556210 C11orf87Q6NUJ2 197 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 C6orf201Q7Z4U5 140 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 NKAIN3Q8N8D7 197 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 RNF141Q8WVD5 230 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 ZNF385AQ96PM9 386 aaKnown RBP13.18□□□□□ -0.3
CUX1-215ENST00000556210 GLRA1P23415 457 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 CYCSP99999 105 aaKnown RBP13.18□□□□□ -0.3
CUX1-215ENST00000556210 SGPP2Q8IWX5 399 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 OR8B12Q8NGG6 310 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 OR1S1Q8NH92 325 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 SGCZQ96LD1 299 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 EIF5A2Q9GZV4 153 aaKnown RBP13.18□□□□□ -0.3
CUX1-215ENST00000556210 RGCCQ9H4X1 137 aa13.18□□□□□ -0.3
CUX1-215ENST00000556210 BCL2L11O43521 198 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 MSR1P21757 451 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 RRADP55042 308 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 ASB10Q8WXI3 467 aa13.17□□□□□ -0.3
CUX1-215ENST00000556210 WNT2BQ93097 391 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms