RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ATP6V1B1P15313 513 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 EPHA2P29317 976 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 FAM76BQ5HYJ3 339 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 FAM201AQ5SY85 155 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 WDR25Q64LD2 544 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 BTNL3Q6UXE8 466 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 MEPCEQ7L2J0 689 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 KRT77Q7Z794 578 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 WDR86Q86TI4 376 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 GID4Q8IVV7 300 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 GCSAMQ8N6F7 178 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 OR8B12Q8NGG6 310 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 OR8S1Q8NH09 359 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 RAB40AQ8WXH6 277 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 LRTOMTQ8WZ04 291 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 OR8B4Q96RC9 309 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 MROQ9BYG7 248 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 OCEL1Q9H607 264 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 C1orf123Q9NWV4 160 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 KAAG1Q9UBP8 84 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 CLN8Q9UBY8 286 aa13.38□□□□□ -0.27
CCDC88C-209ENST00000554872 KIR2DS1A0A191URI9 304 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 TMEM210A6NLX4 147 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 MITFO75030 526 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 MUC1P15941 1255 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 FPR2P25090 351 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 ACKR3P25106 362 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 CD80P33681 288 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 GNALP38405 381 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 ACTR3P61158 418 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 ARMCX4Q5H9R4 360 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 KLF17Q5JT82 389 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 ZBTB37Q5TC79 503 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 C9orf139Q6ZV77 190 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 C11orf53Q8IXP5 236 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 OR1M1Q8NGA1 313 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 UPRTQ96BW1 309 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 C12orf43Q96C57 262 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 LYZL4Q96KX0 146 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 CIB1Q99828 191 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 PAPOLGQ9BWT3 736 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 MOB1AQ9H8S9 216 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 ADGRL4Q9HBW9 690 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 NUFIP1Q9UHK0 495 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 NUP50Q9UKX7 468 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 OAZ3Q9UMX2 235 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 RHBDD3Q9Y3P4 386 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 N6AMT1Q9Y5N5 214 aa13.37□□□□□ -0.27
CCDC88C-209ENST00000554872 ANXA2P2A6NMY6 339 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 GRPP07492 148 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 SRSF2Q01130 221 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 TMED1Q13445 227 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 ZNF829Q3KNS6 432 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 CD276Q5ZPR3 534 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 ZFP1Q6P2D0 407 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 LYPD2Q6UXB3 125 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 WDR82Q6UXN9 313 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 AMIGO2Q86SJ2 522 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 BPIFB2Q8N4F0 458 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 TCEANCQ8N8B7 351 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 OR10Z1Q8NGY1 313 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 FAM216AQ8WUB2 273 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 MICU1Q9BPX6 476 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 RBM4BQ9BQ04 359 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 RTL8AQ9BWD3 113 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 BRD7Q9NPI1 651 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 CTSZQ9UBR2 303 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 COPS3Q9UNS2 423 aa13.36□□□□□ -0.27
CCDC88C-209ENST00000554872 TMEM269A0A1B0GVZ9 245 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 A6NLC8 198 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 PRR32B1ATL7 298 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 SRRM5B3KS81 715 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 ENSAO43768 121 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 SRSF10O75494 262 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 PLATP00750 562 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 LIPFP07098 398 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 RIDAP52758 137 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 EGR3Q06889 387 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 POU4F2Q12837 409 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 Q6ZSR3 168 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 ZNF826PQ6ZT77 177 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 FAM90A1Q86YD7 464 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 OR5P3Q8WZ94 311 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 DMRTB1Q96MA1 342 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 SLC6A7Q99884 636 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 ZMAT3Q9HA38 289 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 CLN6Q9NWW5 311 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 H2AFY2Q9P0M6 372 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 ERVK-18Q9QC07 812 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 WARS2Q9UGM6 360 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 DOCK11Q5JSL3 2073 aa13.35□□□□□ -0.27
CCDC88C-209ENST00000554872 ZNF816-ZNF321PA0A0X1KG74 233 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 hCG_1807616A0A1W2PRN6 198 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 DHRS7CA6NNS2 312 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 TRIM77I1YAP6 450 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 MRPL3P09001 348 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 HTR1FP30939 366 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 MAP2K3P46734 347 aa13.34□□□□□ -0.27
CCDC88C-209ENST00000554872 COMPP49747 757 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms