RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 C10orf35Q96D05 121 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 TSC22D3Q99576 134 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 OPA3Q9H6K4 179 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 GPR84Q9NQS5 396 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 EIF3KQ9UBQ5 218 aaKnown RBP12.48□□□□□ -0.41
SHMT2-208ENST00000553868 A3GALT2U3KPV4 340 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 LOC100509620A0A075B734 347 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 LOC390937A0A1W2PQ73 354 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF14P17017 642 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-208ENST00000553868 SRMP19623 302 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 FSTP19883 344 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 RPS19P39019 145 aaKnown RBP12.47□□□□□ -0.41
SHMT2-208ENST00000553868 IDH3GP51553 393 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-208ENST00000553868 MXD1Q05195 221 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 GFOD2Q3B7J2 385 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 C3orf36Q3SXR2 165 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 FBXL19-AS1Q494R0 122 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 FAM27D1Q5T7N8 215 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 COLCA1Q6ZS62 124 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 NAA40Q86UY6 237 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 PLPP7Q8NBV4 271 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 OR10AC1Q8NH08 325 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 PIGTQ969N2 578 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 SLC25A46Q96AG3 418 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF75AQ96N20 296 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 ACTR6Q9GZN1 396 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 PLEKHA1Q9HB21 404 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF275Q9NSD4 429 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-208ENST00000553868 FOXJ3Q9UPW0 622 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 SLC25A15Q9Y619 301 aa12.47□□□□□ -0.41
SHMT2-208ENST00000553868 DSCAMO60469 2012 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 A0A1B0GTI1 187 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 A0A1W2PPK0 400 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 MEGF11A6BM72 1044 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 DHRS7CA6NNS2 312 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 TMEM127O75204 238 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 DHRS3O75911 302 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 IGKV3-15P01624 115 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 IGLV3-1P01715 115 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 PPP3CBP16298 524 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 RAB3BP20337 219 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 RANBP1P43487 201 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 PPP3R1P63098 170 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF404Q494X3 552 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 LINC00299Q6ZSB3 139 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF584Q8IVC4 421 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 SERPINA12Q8IW75 414 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 PARP16Q8N5Y8 322 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 OR51A4Q8NGJ6 313 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 MCFD2Q8NI22 146 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 S100PBPQ96BU1 408 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 REEP6Q96HR9 211 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 FAM71F1Q96KD3 344 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-208ENST00000553868 DACH2Q96NX9 599 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 CCL19Q99731 98 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 MMP27Q9H306 513 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 TPK1Q9H3S4 243 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 YAE1D1Q9NRH1 226 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 TBCCD1Q9NVR7 557 aa12.46□□□□□ -0.41
SHMT2-208ENST00000553868 CRNNQ9UBG3 495 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-208ENST00000553868 FREM1Q5H8C1 2179 aa12.46□□□□□ -0.42
SHMT2-208ENST00000553868 USF3Q68DE3 2245 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 A0A1W2PR80 420 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 PIN1P1O15428 100 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 SPRY1O43609 319 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-208ENST00000553868 CLPXO76031 633 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 IGLV1-44P01699 117 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 TUBG1P23258 451 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 GNALP38405 381 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 MAP2K3P46734 347 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 HGFACQ04756 655 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 FAM27E3Q08E93 113 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 HNRNPA0Q13151 305 aaKnown RBP12.45□□□□□ -0.42
SHMT2-208ENST00000553868 TNK1Q13470 666 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 PPA1Q15181 289 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 SNAI3Q3KNW1 292 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 Q6ZSR3 168 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 PGAP1Q75T13 922 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 C1orf174Q8IYL3 243 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 OR5D14Q8NGL3 314 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 SGK3Q96BR1 496 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 FGGYQ96C11 551 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 MS4A3Q96HJ5 214 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 SLIRPQ9GZT3 109 aaKnown RBP12.45□□□□□ -0.42
SHMT2-208ENST00000553868 PPIL3Q9H2H8 161 aaKnown RBP12.45□□□□□ -0.42
SHMT2-208ENST00000553868 NEK6Q9HC98 313 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 TUBG2Q9NRH3 451 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 ZNF319Q9P2F9 582 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 CR1P17927 2039 aa12.45□□□□□ -0.42
SHMT2-208ENST00000553868 A0A075B6Q4 140 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 ANXA2P2A6NMY6 339 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 NOTOA8MTQ0 251 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 H3BSH0 61 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 ICMTO60725 284 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 ERCC1P07992 297 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-208ENST00000553868 CLEC2LP0C7M8 214 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 THBS4P35443 961 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 GLYATL3Q5SZD4 288 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 MZT2AQ6P582 158 aa12.44□□□□□ -0.42
SHMT2-208ENST00000553868 MRPL21Q7Z2W9 205 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms