RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 LYNP07948 512 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 SFTPBP07988 381 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 PRR23D2P0DMB1 279 aaPredicted RBP10.57□□□□□ -0.72
LINC00643-202ENST00000553426 POU1F1P28069 291 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 GSK3AP49840 483 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 ZNF121P58317 390 aaPredicted RBP10.57□□□□□ -0.72
LINC00643-202ENST00000553426 ARF6P62330 175 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 HOXA4Q00056 320 aaPredicted RBP10.57□□□□□ -0.72
LINC00643-202ENST00000553426 MS4A2Q01362 244 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 LINC01590Q5TEZ4 76 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 Q6YL49 198 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 CMTM4Q8IZR5 234 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 IQCF1Q8N6M8 205 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 SCCPDHQ8NBX0 429 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 OR4F5Q8NH21 305 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 TBC1D15Q8TC07 691 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 THEM6Q8WUY1 208 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 SSMEM1Q8WWF3 244 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 NIPSNAP1Q9BPW8 284 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 CHID1Q9BWS9 393 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 RASSF4Q9H2L5 321 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 CNTD2Q9H8S5 307 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 MED20Q9H944 212 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 BEX1Q9HBH7 125 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 ABCB9Q9NP78 766 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 TNFRSF19Q9NS68 423 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 ACOXLQ9NUZ1 547 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 VNN3Q9NY84 501 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 MPC1Q9Y5U8 109 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 POMT1Q9Y6A1 747 aa10.57□□□□□ -0.72
LINC00643-202ENST00000553426 IGHV3OR15-7A0A075B7D8 119 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 CENPVL3A0A0U1RRI6 287 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 NDUFB3O43676 98 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 KNG1P01042 644 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 MDKP21741 143 aaPredicted RBP10.56□□□□□ -0.72
LINC00643-202ENST00000553426 ANOS1P23352 680 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 OMGP23515 440 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 OPRL1P41146 370 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 POU4F2Q12837 409 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 KLHL12Q53G59 568 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 RUSC1-AS1Q66K80 236 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 FIP1L1Q6UN15 594 aaKnown RBP10.56□□□□□ -0.72
LINC00643-202ENST00000553426 C17orf107Q6ZR85 190 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 LHX4Q969G2 390 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 C12orf43Q96C57 262 aaKnown RBP10.56□□□□□ -0.72
LINC00643-202ENST00000553426 TBX15Q96SF7 602 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 RTL8AQ9BWD3 113 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 NIPAL2Q9H841 368 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 YY1AP1Q9H869 796 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 SMURF1Q9HCE7 757 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 PDP1Q9P0J1 537 aaPredicted RBP10.56□□□□□ -0.72
LINC00643-202ENST00000553426 RPUSD1Q9UJJ7 312 aaKnown RBP10.56□□□□□ -0.72
LINC00643-202ENST00000553426 ZNF391Q9UJN7 358 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 FAM96BQ9Y3D0 163 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 RHBDD3Q9Y3P4 386 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 MMP24Q9Y5R2 645 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 KPTNQ9Y664 436 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 TRRAPQ9Y4A5 3859 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 PKD1L1Q8TDX9 2849 aa10.56□□□□□ -0.72
LINC00643-202ENST00000553426 IGHV1-69DA0A0B4J2H0 117 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 hCG_38984A0A1B0GV85 526 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 A0A1B0GVI7 797 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 TMEM210A6NLX4 147 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 AQP12BA6NM10 295 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 CDIPTO14735 213 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 PRODHO43272 600 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 IGHV1-69P01742 117 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 MELTFP08582 738 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 MMP9P14780 707 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 RAG2P55895 527 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 RPL15P61313 204 aaKnown RBP10.55□□□□□ -0.72
LINC00643-202ENST00000553426 RPS7P62081 194 aaKnown RBP10.55□□□□□ -0.72
LINC00643-202ENST00000553426 GINS1Q14691 196 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 CDONQ4KMG0 1287 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 LRRC10Q5BKY1 277 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 PLBD1Q6P4A8 553 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 WDR82Q6UXN9 313 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 KCTD8Q6ZWB6 473 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 AQP12AQ8IXF9 295 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 TIGD4Q8IY51 512 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 GALNT4Q8N4A0 578 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 PAPD5Q8NDF8 572 aaKnown RBP10.55□□□□□ -0.72
LINC00643-202ENST00000553426 OTOSQ8NHW6 89 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 DMRTB1Q96MA1 342 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 HIST1H2AAQ96QV6 131 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 CCL13Q99616 98 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 THTPAQ9BU02 230 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 SIRPDQ9H106 197 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 C1orf21Q9H246 121 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 ONECUT1Q9UBC0 465 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 DNAJB11Q9UBS4 358 aa10.55□□□□□ -0.72
LINC00643-202ENST00000553426 CAB39Q9Y376 341 aaPredicted RBP10.55□□□□□ -0.72
LINC00643-202ENST00000553426 NKX6-3A6NJ46 265 aa10.54□□□□□ -0.72
LINC00643-202ENST00000553426 FAM107AO95990 144 aa10.54□□□□□ -0.72
LINC00643-202ENST00000553426 OSMP13725 252 aa10.54□□□□□ -0.72
LINC00643-202ENST00000553426 ANXA8P13928 327 aa10.54□□□□□ -0.72
LINC00643-202ENST00000553426 EEF1B2P24534 225 aaKnown RBP10.54□□□□□ -0.72
LINC00643-202ENST00000553426 CSNK2BP67870 215 aa10.54□□□□□ -0.72
LINC00643-202ENST00000553426 WDR38Q5JTN6 314 aa10.54□□□□□ -0.72
LINC00643-202ENST00000553426 SLC35D3Q5M8T2 416 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms