RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CSAG2Q9Y5P2 127 aa13.35□□□□□ -0.27
CUX1-214ENST00000550008 CD300LBA8K4G0 201 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 ATP6V1G2-DDX39BF2Z307 99 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 PDGFAP04085 211 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 ZC3HAV1LQ96H79 300 aaKnown RBP13.34□□□□□ -0.27
CUX1-214ENST00000550008 TAAR9Q96RI9 348 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 SPIN2AQ99865 258 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 SPIN2BQ9BPZ2 258 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 SF3B6Q9Y3B4 125 aaKnown RBP13.34□□□□□ -0.27
CUX1-214ENST00000550008 A0A0D9SG52 128 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 MT-CO3P00414 261 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 ASAH2BP0C7U1 165 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 DEFB109BQ30KR1 87 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 MUC20Q8N307 709 aaPredicted RBP13.34□□□□□ -0.27
CUX1-214ENST00000550008 EMG1Q92979 244 aaKnown RBP13.34□□□□□ -0.27
CUX1-214ENST00000550008 KCNJ15Q99712 375 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 IGKV1D-42A0A075B6H8 117 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 HSD17B6O14756 317 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 ZNF354AO60765 605 aaPredicted RBP13.34□□□□□ -0.27
CUX1-214ENST00000550008 BPNT1O95861 308 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 GSG1Q2KHT4 349 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 KRBOX4Q5JUW0 171 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 FAM219AQ8IW50 185 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 CARFQ8N187 725 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 PPP1R1CQ8WVI7 109 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 TMED6Q8WW62 240 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 TRIB1Q96RU8 372 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 NELFAQ9H3P2 528 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 UCK1Q9HA47 277 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 C1orf123Q9NWV4 160 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 TCFL5Q9UL49 500 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 HSPB2A8KAH6 182 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 OR5H8P0DN80 308 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 HSPB2Q16082 182 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 SP6Q3SY56 376 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 PAN3Q58A45 887 aaKnown RBP13.34□□□□□ -0.27
CUX1-214ENST00000550008 SLC51BQ86UW2 128 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 SLC38A9Q8NBW4 561 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 OR11G2Q8NGC1 345 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 OR8B12Q8NGG6 310 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 ZNRF4Q8WWF5 429 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 ZNF385AQ96PM9 386 aaKnown RBP13.34□□□□□ -0.27
CUX1-214ENST00000550008 TMPRSS13Q9BYE2 586 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 ENY2Q9NPA8 101 aa13.34□□□□□ -0.27
CUX1-214ENST00000550008 KLF13Q9Y2Y9 288 aaPredicted RBP13.34□□□□□ -0.27
CUX1-214ENST00000550008 RALGAPA1Q6GYQ0 2036 aa13.33□□□□□ -0.27
CUX1-214ENST00000550008 A0A087WZY1 265 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 A0A1W2PQD3 144 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 ITGB2P05107 769 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 ARF1P84077 181 aaKnown RBP13.33□□□□□ -0.28
CUX1-214ENST00000550008 CEBPEQ15744 281 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 AKR1C8PQ5T2L2 129 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 CT55Q8WUE5 264 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 ASB5Q8WWX0 329 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 FREM3P0C091 2139 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 NDUFB6O95139 128 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 CD96P40200 585 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 FABP6P51161 128 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 ESCO2Q56NI9 601 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 PMS2CLQ68D20 193 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 C6orf201Q7Z4U5 140 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 TCTE3Q8IZS6 198 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 DEFB124Q8NES8 71 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 NXF2Q9GZY0 626 aaKnown RBP13.33□□□□□ -0.28
CUX1-214ENST00000550008 ZFP64Q9NPA5 681 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 TSPAN2O60636 221 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 PNPP00491 289 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 PLA2G7Q13093 441 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 OCSTAMPQ9BR26 566 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 PRR13Q9NZ81 148 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 NTMQ9P121 344 aa13.33□□□□□ -0.28
CUX1-214ENST00000550008 RPS4Y1P22090 263 aaKnown RBP13.32□□□□□ -0.28
CUX1-214ENST00000550008 RTL6Q6ICC9 239 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 OR1F12Q8NHA8 337 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 ADIPOR1Q96A54 375 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 MUCL1Q96DR8 90 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 PGLYRP3Q96LB9 341 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 C12orf10Q9HB07 376 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 IRF2P14316 349 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 FCGR2CP31995 323 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 PPT1P50897 306 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 GLDNQ6ZMI3 551 aaPredicted RBP13.32□□□□□ -0.28
CUX1-214ENST00000550008 DUSP18Q8NEJ0 188 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 CNTNAP3BQ96NU0 1288 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 NLRC5Q86WI3 1866 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 CCDC187A0A096LP49 1063 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 KIR3DL2P43630 455 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 RAB1AP62820 205 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 RPS27AP62979 156 aaKnown RBP13.32□□□□□ -0.28
CUX1-214ENST00000550008 UBA52P62987 128 aaKnown RBP13.32□□□□□ -0.28
CUX1-214ENST00000550008 RAC1P63000 192 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 TAGLNQ01995 201 aaKnown RBP13.32□□□□□ -0.28
CUX1-214ENST00000550008 OR2B11Q5JQS5 317 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 SFRP5Q5T4F7 317 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 EXD3Q8N9H8 876 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 ABHD3Q8WU67 409 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 UQCC2Q9BRT2 126 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 GNG12Q9UBI6 72 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 TP53BP1Q12888 1972 aaPredicted RBP13.32□□□□□ -0.28
CUX1-214ENST00000550008 TOX3O15405 576 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms