RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669		A0A1W2PNR3	127 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669		A0A1W2PQM1	296 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	MPTX1	A8MV57	137 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669		K7ESF4	209 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	RER1	O15258	196 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	RRP8	O43159	456 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	CBR3	O75828	277 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	SCO1	O75880	301 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	AIMP2	Q13155	320 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	CHRFAM7A	Q494W8	412 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	LRRC37A5P	Q49AS3	106 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	CARD17	Q5XLA6	110 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	GUSBP11	Q6P575	273 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	PRSS54	Q6PEW0	395 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	BAP18	Q8IXM2	172 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	CMBL	Q96DG6	245 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	PIK3IP1	Q96FE7	263 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	SGCZ	Q96LD1	299 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	C2orf50	Q96LR7	162 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	C1orf147	Q96MC9	270 aa	Predicted RBP	11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	AIFM2	Q9BRQ8	373 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	C12orf4	Q9NQ89	552 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	ZNF230	Q9UIE0	474 aa	Predicted RBP	11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	SPTB	P11277	2137 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	C13orf42	A0A1B0GVH6	325 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	POM121C	A8CG34	1229 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	EEF1E1-BLOC1S5	C9J1V9	151 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	TSPAN4	O14817	238 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	DHH	O43323	396 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	ICAM2	P13598	275 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	AVPR2	P30518	371 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	SFTPD	P35247	375 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	SERPINF1	P36955	418 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	SSR4	P51571	173 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	RAC1	P63000	192 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	MRPS34	P82930	218 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	BTN1A1	Q13410	526 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	FAM27B	Q5VT28	67 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	DRAM2	Q6UX65	266 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	C17orf107	Q6ZR85	190 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	LHFPL1	Q86WI0	220 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	MAML2	Q8IZL2	1156 aa	Predicted RBP	11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	OR5AP2	Q8NGF4	316 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	KCNE4	Q8WWG9	221 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	DCUN1D4	Q92564	292 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	MRGPRF	Q96AM1	343 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	MRPS24	Q96EL2	167 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	ZNF416	Q9BWM5	594 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	C1orf123	Q9NWV4	160 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	MBD2	Q9UBB5	411 aa		11.49	□□□□□ -0.57
CPSF7-223	ENST00000544669	LOC100509620	A0A075B734	347 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	SOCS1	O15524	211 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	FGF16	O43320	207 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	SIGLEC6	O43699	453 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	TIAF1	O95411	115 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	OTX1	P32242	354 aa	Predicted RBP	11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	CDA	P32320	146 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	OR3A4P	P47883	348 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	TMEM50B	P56557	158 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	PPIA	P62937	165 aa	Known RBP	11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	PCOLCE	Q15113	449 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	CNN3	Q15417	329 aa	Known RBP	11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	STK11	Q15831	433 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	PLAC9	Q5JTB6	97 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	ZBTB44	Q8NCP5	570 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	AGBL5	Q8NDL9	886 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	CSNK2A3	Q8NEV1	391 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	PAQR8	Q8TEZ7	354 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	ARL11	Q969Q4	196 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	SAT2	Q96F10	170 aa	Predicted RBP	11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	TECTB	Q96PL2	329 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	AQP10	Q96PS8	301 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	NKX3-1	Q99801	234 aa	Predicted RBP	11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	RGCC	Q9H4X1	137 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	METTL8	Q9H825	291 aa	Known RBP	11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	BARX1	Q9HBU1	254 aa	Predicted RBP	11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	GPR160	Q9UJ42	338 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	DKKL1	Q9UK85	242 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	CSAG2	Q9Y5P2	127 aa		11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	MKI67	P46013	3256 aa	Known RBP	11.48	□□□□□ -0.57
CPSF7-223	ENST00000544669	IGHV1-45	A0A0A0MS14	117 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	SHISA8	B8ZZ34	492 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	CCS	O14618	274 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	APOC3	P02656	99 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	MYF5	P13349	255 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	LIF	P15018	202 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	ATF4	P18848	351 aa	Predicted RBP	11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	BLVRB	P30043	206 aa	Predicted RBP	11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	SLC6A9	P48067	706 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	DHPS	P49366	369 aa	Predicted RBP	11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	SNU13	P55769	128 aa	Known RBP	11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	SCRN3	Q0VDG4	424 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	MFAP5	Q13361	173 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	ZNF273	Q14593	569 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	SLC22A6	Q4U2R8	563 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	SMUG1	Q53HV7	270 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	ELP2	Q6IA86	826 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	CLEC18B	Q6UXF7	455 aa		11.47	□□□□□ -0.57
CPSF7-223	ENST00000544669	IL34	Q6ZMJ4	242 aa		11.47	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 113 ms