RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 ALKBH4Q9NXW9 302 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 OR5AC2Q9NZP5 309 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 PCDHB10Q9UN67 800 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 B3GALT5Q9Y2C3 310 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 PCDHGA1Q9Y5H4 931 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 LRP4O75096 1905 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 IGKV1D-8A0A087WSZ0 117 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 A0A1B0GTI1 187 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 OR14I1A6ND48 311 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 TNFSF12O43508 249 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 IGFBP7Q16270 282 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 PHLDA2Q53GA4 152 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 DRAM2Q6UX65 266 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 GTPBP8Q8N3Z3 284 aaPredicted RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 BVESQ8NE79 360 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 NFAM1Q8NET5 270 aaPredicted RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 OR5L2Q8NGL0 311 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 ST8SIA1Q92185 356 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 CCNL2Q96S94 520 aaPredicted RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 TSNAXQ99598 290 aaKnown RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 SPSB2Q99619 263 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 IGKV1-9A0A0C4DH69 117 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 TRAF3IP2O43734 574 aaPredicted RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 RCC1P18754 421 aaPredicted RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 ITGA3P26006 1051 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 AIMP2Q13155 320 aaKnown RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 KISS1Q15726 138 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 CHRFAM7AQ494W8 412 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 FAM180AQ6UWF9 173 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 NOXO1Q8NFA2 376 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 RRNAD1Q96FB5 475 aaKnown RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 FAAP24Q9BTP7 215 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 PLEKHJ1Q9NW61 149 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 EMC3Q9P0I2 261 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 A0A0G2JMM0 328 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 A0A1W2PPB8 328 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 A0A1W2PRS3 328 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 KIR3DP1A8MWS1 328 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 TO15178 435 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 EFSO43281 561 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 CDC14BO60729 498 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 FOSL2P15408 326 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 DUSP1P28562 367 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 CASRP41180 1078 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 MMP16P51512 607 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 ACY1Q03154 408 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 SHBQ15464 509 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 LYSMD4Q5XG99 296 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 SPACA9Q96E40 222 aaPredicted RBP11.94□□□□□ -0.5
PTPN1-202ENST00000541713 SRPK3Q9UPE1 567 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 SIT1Q9Y3P8 196 aa11.94□□□□□ -0.5
PTPN1-202ENST00000541713 RNF222A6NCQ9 220 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 PGA4P0DJD7 388 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 PGA3P0DJD8 388 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 MGMTP16455 207 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 MPGP29372 298 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 CEBPGP53567 150 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 MTCP1P56278 107 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 TCEAL6Q6IPX3 200 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 C17orf82Q86X59 251 aaPredicted RBP11.93□□□□□ -0.5
PTPN1-202ENST00000541713 CBLN2Q8IUK8 224 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 OR5AS1Q8N127 324 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 ZFP82Q8N141 532 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 PLPP5Q8NEB5 264 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 TCEAL3Q969E4 200 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 MRPS24Q96EL2 167 aaKnown RBP11.93□□□□□ -0.5
PTPN1-202ENST00000541713 ULBP2Q9BZM5 246 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 NXT1Q9UKK6 140 aaKnown RBP11.93□□□□□ -0.5
PTPN1-202ENST00000541713 TMEM131Q92545 1883 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 A0A0A6YYH2 397 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 MEX3AA1L020 520 aaKnown RBP11.93□□□□□ -0.5
PTPN1-202ENST00000541713 A6NJ64 397 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 OR6C76A6NM76 312 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 XRCC2O43543 280 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 DIRAS3O95661 229 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 ZBTB25P24278 435 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 GALNSP34059 522 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 RAB32Q13637 225 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 SNAI3Q3KNW1 292 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 PLEKHN1Q494U1 663 aaPredicted RBP11.93□□□□□ -0.5
PTPN1-202ENST00000541713 CLVS2Q5SYC1 327 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 JMJD6Q6NYC1 403 aaPredicted RBP11.93□□□□□ -0.5
PTPN1-202ENST00000541713 OR14L1PQ8NHC6 308 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 OR10C1Q96KK4 312 aa11.93□□□□□ -0.5
PTPN1-202ENST00000541713 A0A096LPE4 126 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 A0A1W2PPZ6 126 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 ZNF850A8MQ14 1090 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 SRSF10O75494 262 aaKnown RBP11.92□□□□□ -0.5
PTPN1-202ENST00000541713 UBE2V2Q15819 145 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 GUCA2BQ16661 112 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 ZNF774Q6NX45 483 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 CLEC18BQ6UXF7 455 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 OR5T2Q8NGG2 359 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 AQP3Q92482 292 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 KIF25Q9UIL4 384 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 DCHS1Q96JQ0 3298 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 SNTB1Q13884 538 aaKnown RBP11.92□□□□□ -0.5
PTPN1-202ENST00000541713 ANKRD55Q3KP44 614 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 THEM4Q5T1C6 240 aa11.92□□□□□ -0.5
PTPN1-202ENST00000541713 OR2M3Q8NG83 312 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms