RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ZNF322Q6U7Q0 402 aaPredicted RBP11.85□□□□□ -0.51
USP28-209ENST00000540925 DCDC5Q6ZRR9 648 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 Q6ZSR3 168 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 SLC35F2Q8IXU6 374 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 GALNT4Q8N4A0 578 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 GCSAMQ8N6F7 178 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 HPSE2Q8WWQ2 592 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 EME1Q96AY2 570 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 HRASLS5Q96KN8 279 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 MROQ9BYG7 248 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 C14orf119Q9NWQ9 140 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 MIOXQ9UGB7 285 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 WARS2Q9UGM6 360 aaKnown RBP11.85□□□□□ -0.51
USP28-209ENST00000540925 MRM2Q9UI43 246 aaKnown RBP11.85□□□□□ -0.51
USP28-209ENST00000540925 INSIG2Q9Y5U4 225 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.84□□□□□ -0.51
USP28-209ENST00000540925 LGALS8O00214 317 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 PHYHO14832 338 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 IRF2P14316 349 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 RPS2P15880 293 aaKnown RBP11.84□□□□□ -0.51
USP28-209ENST00000540925 CXCR4P61073 352 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 PAX8Q06710 450 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 EGR3Q06889 387 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 MFGE8Q08431 387 aaPredicted RBP11.84□□□□□ -0.51
USP28-209ENST00000540925 ZNF154Q13106 437 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 TMED1Q13445 227 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 SNCBQ16143 134 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 ESCO2Q56NI9 601 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 TEX36Q5VZQ5 186 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 LYPD2Q6UXB3 125 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 ZNF826PQ6ZT77 177 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 SSX6Q7RTT6 188 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 PHC2Q8IXK0 858 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 TEX29Q8N6K0 151 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 C19orf18Q8NEA5 215 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 OR1M1Q8NGA1 313 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 TRUB1Q8WWH5 349 aaKnown RBP11.84□□□□□ -0.51
USP28-209ENST00000540925 OR5P3Q8WZ94 311 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 NEIL1Q96FI4 390 aaPredicted RBP11.84□□□□□ -0.51
USP28-209ENST00000540925 SSBP3Q9BWW4 388 aaPredicted RBP11.84□□□□□ -0.51
USP28-209ENST00000540925 PBOV1Q9GZY1 135 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 METTL17Q9H7H0 456 aaPredicted RBP11.84□□□□□ -0.51
USP28-209ENST00000540925 RNPEPL1Q9HAU8 725 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 C1orf123Q9NWV4 160 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 H2AFY2Q9P0M6 372 aaPredicted RBP11.84□□□□□ -0.51
USP28-209ENST00000540925 MPC1Q9Y5U8 109 aa11.84□□□□□ -0.51
USP28-209ENST00000540925 MAGEB4O15481 346 aaPredicted RBP11.83□□□□□ -0.52
USP28-209ENST00000540925 FCN3O75636 299 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 TTRP02766 147 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 GRPP07492 148 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 EGR1P18146 543 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 ADRA2CP18825 462 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 RIDAP52758 137 aaKnown RBP11.83□□□□□ -0.52
USP28-209ENST00000540925 CSNK2BP67870 215 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 SRSF2Q01130 221 aaKnown RBP11.83□□□□□ -0.52
USP28-209ENST00000540925 PRDX4Q13162 271 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 ZNF829Q3KNS6 432 aaPredicted RBP11.83□□□□□ -0.52
USP28-209ENST00000540925 WDR82Q6UXN9 313 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 C10orf67Q8IYJ2 551 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 FTMTQ8N4E7 242 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 CBR4Q8N4T8 237 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 OR51G2Q8NGK0 314 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 OR8S1Q8NH09 359 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 TMEM158Q8WZ71 300 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 UBE2FQ969M7 185 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 PPP1R14AQ96A00 147 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 MBOAT4Q96T53 435 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 APOL4Q9BPW4 351 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 PAPOLGQ9BWT3 736 aaKnown RBP11.83□□□□□ -0.52
USP28-209ENST00000540925 TTTY10Q9BZA0 68 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 C7orf69Q9H7B7 122 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 S100A14Q9HCY8 104 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 ABCB9Q9NP78 766 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.83□□□□□ -0.52
USP28-209ENST00000540925 CTSZQ9UBR2 303 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 METRNQ9UJH8 293 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 R4GMQ9 66 aa11.83□□□□□ -0.52
USP28-209ENST00000540925 OOEPA6NGQ2 149 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 RNF212BA8MTL3 300 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 J3QRE1 110 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 OR2T7P0C7T2 308 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 PPIAL4GP0DN37 164 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 ATP6V1B1P15313 513 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 GABRB1P18505 474 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 CD80P33681 288 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 PITPNBP48739 271 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 CDC42P60953 191 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 ISL1P61371 349 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 SNRPGP62308 76 aaKnown RBP11.82□□□□□ -0.52
USP28-209ENST00000540925 IL5RAQ01344 420 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 POU4F2Q12837 409 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 KLF17Q5JT82 389 aaPredicted RBP11.82□□□□□ -0.52
USP28-209ENST00000540925 ZBTB37Q5TC79 503 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 WDR25Q64LD2 544 aaPredicted RBP11.82□□□□□ -0.52
USP28-209ENST00000540925 FAM90A1Q86YD7 464 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 ELMOD2Q8IZ81 293 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 PQLC1Q8N2U9 271 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 SEMA6DQ8NFY4 1073 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 OR2T27Q8NH04 317 aa11.82□□□□□ -0.52
USP28-209ENST00000540925 FAM81AQ8TBF8 368 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms