RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 YAE1D1Q9NRH1 226 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 DCAF16Q9NXF7 216 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 NUFIP1Q9UHK0 495 aaKnown RBP12.69□□□□□ -0.38
CPSF1-208ENST00000532560 NPTNQ9Y639 398 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.69□□□□□ -0.385e-6■□□□□ 10.4
CPSF1-208ENST00000532560 ABCA2Q9BZC7 2435 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 A0A1W2PQL4 384 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-208ENST00000532560 SNTNA6NMZ2 147 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 ANKRD30BLA7E2S9 258 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 APOL3O95236 402 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 IGHV2-70P01814 119 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 CRHBPP24387 322 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 ATP6V1E1P36543 226 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 CDH15P55291 814 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 LMO4P61968 165 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 MFGE8Q08431 387 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-208ENST00000532560 FAM166AQ6J272 317 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 KCTD8Q6ZWB6 473 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 SSX6Q7RTT6 188 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 FTMTQ8N4E7 242 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 LINC01356Q8N9X3 169 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 SPERTQ8NA61 448 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 OR10H4Q8NGA5 316 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 RHOXF1Q8NHV9 184 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 Q8TCH9 128 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 FBLIM1Q8WUP2 373 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 ITFG2Q969R8 447 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 ERGIC1Q969X5 290 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 LYZL4Q96KX0 146 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 APOL4Q9BPW4 351 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 PBOV1Q9GZY1 135 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 TMEM160Q9NX00 188 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 MRM2Q9UI43 246 aaKnown RBP12.68□□□□□ -0.38
CPSF1-208ENST00000532560 R4GMQ9 66 aa12.68□□□□□ -0.38
CPSF1-208ENST00000532560 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-208ENST00000532560 LOC100289279A0A1B0GTE1 492 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 TMEM178BH3BS89 294 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 IGLV3-1P01715 115 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 IGHV2-5P01817 119 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 KRT8P05787 483 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 HOXB4P17483 251 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-208ENST00000532560 BTG1P62324 171 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 CSNK2BP67870 215 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 ACTC1P68032 377 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 ACTA1P68133 377 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 MZT1Q08AG7 82 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 HNRNPA0Q13151 305 aaKnown RBP12.67□□□□□ -0.38
CPSF1-208ENST00000532560 C6orf141Q5SZD1 244 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 ZNF684Q5T5D7 378 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 ZNF691Q5VV52 312 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 MOGAT3Q86VF5 341 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 PLPP7Q8NBV4 271 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 OR13F1Q8NGS4 319 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 RAB2BQ8WUD1 216 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 DVL3Q92997 716 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-208ENST00000532560 TMIGD2Q96BF3 282 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 RAB39BQ96DA2 213 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 RNFT2Q96EX2 444 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 Q96MT0 163 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 TBX5Q99593 518 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 GAL3ST1Q99999 423 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 ZNF665Q9H7R5 613 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 KCNS2Q9ULS6 477 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 PCDHGB1Q9Y5G3 927 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 SNX5Q9Y5X3 404 aa12.67□□□□□ -0.38
CPSF1-208ENST00000532560 MALRD1Q5VYJ5 2156 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 ISPDA4D126 451 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 LRRC30A6NM36 301 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 B4DSR2 109 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 LOC110117498-PIK3R3F6TDL0 507 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 J3QRE1 110 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 MAGEB4O15481 346 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-208ENST00000532560 SULT1C4O75897 302 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 FSTL3O95633 263 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 PNPP00491 289 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 EEF1B2P24534 225 aaKnown RBP12.66□□□□□ -0.38
CPSF1-208ENST00000532560 ACKR3P25106 362 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 ZNF91Q05481 1191 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 TMEM155Q4W5P6 130 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 BCL2L15Q5TBC7 163 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 PRAMEF6Q5VXH4 476 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 LINC00299Q6ZSB3 139 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 C1orf87Q8N0U7 546 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 C12orf43Q96C57 262 aaKnown RBP12.66□□□□□ -0.38
CPSF1-208ENST00000532560 PAPOLGQ9BWT3 736 aaKnown RBP12.66□□□□□ -0.38
CPSF1-208ENST00000532560 FN3KRPQ9HA64 309 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 PLGRKTQ9HBL7 147 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 ABCB9Q9NP78 766 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 C14orf119Q9NWQ9 140 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 AASSQ9UDR5 926 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 RHBDD3Q9Y3P4 386 aa12.66□□□□□ -0.38
CPSF1-208ENST00000532560 SONP18583 2426 aaKnown RBP12.66□□□□□ -0.38
CPSF1-208ENST00000532560 IGHV3-64DA0A0J9YX35 117 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 METTL15A6NJ78 407 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 FAM157AC9JC47 383 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 LMX1BO60663 402 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 CST4P01036 141 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 TGFAP01135 160 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 TTRP02766 147 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 DBTP11182 482 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms