RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 OR1M1Q8NGA1 313 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 OR8B12Q8NGG6 310 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 DACT3Q96B18 629 aaPredicted RBP11.09□□□□□ -0.63
VPS28-211ENST00000530790 UPRTQ96BW1 309 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 CNN2Q99439 309 aaKnown RBP11.09□□□□□ -0.63
VPS28-211ENST00000530790 MICU1Q9BPX6 476 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 RTL8AQ9BWD3 113 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 MS4A7Q9GZW8 240 aaPredicted RBP11.09□□□□□ -0.63
VPS28-211ENST00000530790 ESM1Q9NQ30 184 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 CTSZQ9UBR2 303 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 ENOPH1Q9UHY7 261 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 RHBDD3Q9Y3P4 386 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 KIR2DS1A0A191URI9 304 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 CCDC182A6NF36 153 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 C22orf46C9J442 243 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 PRKYO43930 277 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 GYPAP02724 150 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 IGHV4-38-2P0DP08 117 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 EGR1P18146 543 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 UBA52P62987 128 aaKnown RBP11.08□□□□□ -0.64
VPS28-211ENST00000530790 CSNK2BP67870 215 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 TEX36Q5VZQ5 186 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 CD276Q5ZPR3 534 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 DOK3Q7L591 496 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 FAM90A1Q86YD7 464 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 ZDHHC13Q8IUH4 622 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 ZDHHC22Q8N966 263 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 FAM81AQ8TBF8 368 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 LRRC29Q8WV35 223 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 ASB17Q8WXJ9 295 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 GCDHQ92947 438 aaPredicted RBP11.08□□□□□ -0.64
VPS28-211ENST00000530790 ITPKCQ96DU7 683 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 TEAD3Q99594 435 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 MROQ9BYG7 248 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 GABARAPL1Q9H0R8 117 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 RNPEPL1Q9HAU8 725 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 AP4S1Q9Y587 144 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 MPC1Q9Y5U8 109 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 TMEM14AQ9Y6G1 99 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 WNK2Q9Y3S1 2297 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 ARHGAP32A7KAX9 2087 aa11.08□□□□□ -0.64
VPS28-211ENST00000530790 IGHV3OR15-7A0A075B7D8 119 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 IGHV3OR16-10A0A075B7F0 116 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 DNAJC9-AS1A6NH13 148 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 SLC22A31A6NKX4 558 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 M0R129 80 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 MITFO75030 526 aaPredicted RBP11.07□□□□□ -0.64
VPS28-211ENST00000530790 CIB2O75838 187 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 LHBP01229 141 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 ACKR3P25106 362 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 HCCSP53701 268 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 FGF12P61328 243 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 PRDX4Q13162 271 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 MICBQ29980 383 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 ZNF829Q3KNS6 432 aaPredicted RBP11.07□□□□□ -0.64
VPS28-211ENST00000530790 DEGS2Q6QHC5 323 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 WDR82Q6UXN9 313 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 COMMD2Q86X83 199 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 ZDHHC23Q8IYP9 409 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 GALNT4Q8N4A0 578 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 LYZL4Q96KX0 146 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 TTTY10Q9BZA0 68 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 PPP1R3EQ9H7J1 279 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 ZMAT3Q9HA38 289 aaKnown RBP11.07□□□□□ -0.64
VPS28-211ENST00000530790 FAM206AQ9NX38 181 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 IKZF2Q9UKS7 526 aa11.07□□□□□ -0.64
VPS28-211ENST00000530790 TMEM269A0A1B0GVZ9 245 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 TMEM210A6NLX4 147 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 ZAR1LA6NP61 321 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 ZNF850A8MQ14 1090 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 PSMD9O00233 223 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 CDIPTO14735 213 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 TMPRSS2O15393 492 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 ZNF254O75437 659 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 PLATP00750 562 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 CST4P01036 141 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 MUC1P15941 1255 aaPredicted RBP11.06□□□□□ -0.64
VPS28-211ENST00000530790 MTNR1AP48039 350 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 RIDAP52758 137 aaKnown RBP11.06□□□□□ -0.64
VPS28-211ENST00000530790 ROM1Q03395 351 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 BAMBIQ13145 260 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 TUSC1Q2TAM9 212 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 SLX4IPQ5VYV7 408 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 NXNL2Q5VZ03 156 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 C12orf73Q69YU5 71 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 KDM4DQ6B0I6 523 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 C9orf139Q6ZV77 190 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 KCTD8Q6ZWB6 473 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 AMIGO2Q86SJ2 522 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 C11orf53Q8IXP5 236 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 ZNF679Q8IYX0 411 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 BCL6BQ8N143 479 aaPredicted RBP11.06□□□□□ -0.64
VPS28-211ENST00000530790 TCEANCQ8N8B7 351 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 PNLDC1Q8NA58 520 aaKnown RBP11.06□□□□□ -0.64
VPS28-211ENST00000530790 TMEM163Q8TC26 289 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 DUS3LQ96G46 650 aaKnown RBP11.06□□□□□ -0.64
VPS28-211ENST00000530790 OR8B4Q96RC9 309 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 PKP2Q99959 881 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 TLNRD1Q9H1K6 362 aa11.06□□□□□ -0.64
VPS28-211ENST00000530790 SMURF1Q9HCE7 757 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms