RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 VDAC3Q9Y277 283 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 SLC5A6Q9Y289 635 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 DMRT1Q9Y5R6 373 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 ZNF823P16415 610 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 GLP1RP43220 463 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 FHITP49789 147 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 TEX30Q5JUR7 227 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 LIPHQ8WWY8 451 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 C5orf34Q96MH7 638 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 AQP10Q96PS8 301 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 WWTR1Q9GZV5 400 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 ADAM19Q9H013 955 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 TMPRSS5Q9H3S3 457 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 EMC9Q9Y3B6 208 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 PHYHO14832 338 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 CSTBP04080 98 aaKnown RBP12.59□□□□□ -0.39
USP48-213ENST00000529637 FOLR1P15328 257 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 CD27P26842 260 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 HNRNPKP61978 463 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP48-213ENST00000529637 SUPT4H1P63272 117 aaKnown RBP12.59□□□□□ -0.39
USP48-213ENST00000529637 SPEM2Q0P670 501 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 NICN1Q9BSH3 213 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 TOLLIPQ9H0E2 274 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 RHBDD3Q9Y3P4 386 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 IGKV3-11P04433 115 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 HSD11B2P80365 405 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 INSM1Q01101 510 aaPredicted RBP12.59□□□□□ -0.39
USP48-213ENST00000529637 ZNF239Q16600 458 aaKnown RBP12.59□□□□□ -0.39
USP48-213ENST00000529637 C14orf28Q4W4Y0 310 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 COL13A1Q5TAT6 717 aaPredicted RBP12.59□□□□□ -0.39
USP48-213ENST00000529637 HOGA1Q86XE5 327 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 ZNF383Q8NA42 475 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 OR13C3Q8NGS6 347 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 ABHD6Q9BV23 337 aa12.59□□□□□ -0.39
USP48-213ENST00000529637 NME2P1O60361 137 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 OPN1LWP04000 364 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 HLA-DOBP13765 273 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 SULT1A2P50226 295 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 POLR2HP52434 150 aaKnown RBP12.58□□□□□ -0.39
USP48-213ENST00000529637 FMODQ06828 376 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 SGCBQ16585 318 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 FAHD2BQ6P2I3 314 aaPredicted RBP12.58□□□□□ -0.39
USP48-213ENST00000529637 UNQ6494/PRO21346Q6UXR6 183 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.58□□□□□ -0.39
USP48-213ENST00000529637 PNLDC1Q8NA58 520 aaKnown RBP12.58□□□□□ -0.39
USP48-213ENST00000529637 FAHD2AQ96GK7 314 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 TAAR9Q96RI9 348 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 PTGES2Q9H7Z7 377 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 LRP12Q9Y561 859 aa12.58□□□□□ -0.39
USP48-213ENST00000529637 SHISA7A6NL88 538 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 METTL12A8MUP2 240 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 H3BML4 177 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 HOXB5P09067 269 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 IL11P20809 199 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 EFNA3P52797 238 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 RAB2AP61019 212 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 GLO1Q04760 184 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 FDX2Q6P4F2 183 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 MESP1Q9BRJ9 268 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 RGCCQ9H4X1 137 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 METTL8Q9H825 291 aaKnown RBP12.58□□□□□ -0.4
USP48-213ENST00000529637 ZNF107Q9UII5 783 aaPredicted RBP12.58□□□□□ -0.4
USP48-213ENST00000529637 KPTNQ9Y664 436 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 A0A1B0GV50 99 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 A8MVM7 634 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 ALG1L2C9J202 215 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 ZNF217O75362 1048 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 GNALP38405 381 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 SULT1A1P50225 295 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 DEFA6Q01524 100 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 TMEM128Q5BJH2 165 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 SYT13Q7L8C5 426 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 CATSPERDQ86XM0 798 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 OR52N4Q8NGI2 321 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 OR4K15Q8NH41 348 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 SPACA5Q96QH8 159 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 OR5B2Q96R09 309 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 VN1R1Q9GZP7 353 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 GPR27Q9NS67 375 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 TREM2Q9NZC2 230 aa12.58□□□□□ -0.4
USP48-213ENST00000529637 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 METTL21EPA6NDL7 271 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 NPIPA5E9PKD4 350 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 SLC34A2O95436 690 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 HKR1P10072 659 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 DCAF7P61962 342 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 CYCSP99999 105 aaKnown RBP12.57□□□□□ -0.4
USP48-213ENST00000529637 PHF19Q5T6S3 580 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 LYPD6Q86Y78 171 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 TMEM104Q8NE00 496 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 SCRT1Q9BWW7 348 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 TXNIPQ9H3M7 391 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 NPIPA1Q9UND3 350 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 LOC107986453A0A1B0GWG9 222 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 LMO7DNF2Z398 122 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 IFNA2P01563 188 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 MPZP25189 248 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 GALNSP34059 522 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 MIDNQ504T8 468 aa12.57□□□□□ -0.4
USP48-213ENST00000529637 AWAT2Q6E213 333 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms