RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 YAE1D1Q9NRH1 226 aa11.26□□□□□ -0.61
VPS28-210ENST00000529182 ZNF391Q9UJN7 358 aa11.26□□□□□ -0.61
VPS28-210ENST00000529182 NOP16Q9Y3C1 178 aaKnown RBP11.26□□□□□ -0.61
VPS28-210ENST00000529182 RPL36Q9Y3U8 105 aaKnown RBP11.26□□□□□ -0.61
VPS28-210ENST00000529182 SNX5Q9Y5X3 404 aa11.26□□□□□ -0.61
VPS28-210ENST00000529182 NPTNQ9Y639 398 aa11.26□□□□□ -0.61
VPS28-210ENST00000529182 YLPM1P49750 1951 aaKnown RBP11.26□□□□□ -0.61
VPS28-210ENST00000529182 A0A1B0GTI1 187 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 FAM157AC9JC47 383 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 INAFM1C9JVW0 142 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 H0YAE9 185 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 J3QLW9 94 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 FADS2O95864 444 aaKnown RBP11.25□□□□□ -0.61
VPS28-210ENST00000529182 IGHV2-70P01814 119 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 GRPP07492 148 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 ZNF19P17023 458 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 GNALP38405 381 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 KIR3DL2P43630 455 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 GATA4P43694 442 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 GZMKP49863 264 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 LMO4P61968 165 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 RAB40BQ12829 278 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 ZMYND11Q15326 602 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 WDR38Q5JTN6 314 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 C6orf52Q5T4I8 152 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 ZNF826PQ6ZT77 177 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 FAM220AQ7Z4H9 259 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 CELF2-AS1Q8N7Q2 184 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 SETD9Q8NE22 299 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 CSNK2A3Q8NEV1 391 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 SEMA6DQ8NFY4 1073 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 OR8S1Q8NH09 359 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 C4orf36Q96KX1 117 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 ZNF649Q9BS31 505 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 ALG8Q9BVK2 526 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 ISG20L2Q9H9L3 353 aaKnown RBP11.25□□□□□ -0.61
VPS28-210ENST00000529182 MRPS18AQ9NVS2 196 aaKnown RBP11.25□□□□□ -0.61
VPS28-210ENST00000529182 UBAP1Q9NZ09 502 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 PCDHGB1Q9Y5G3 927 aa11.25□□□□□ -0.61
VPS28-210ENST00000529182 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.24□□□□□ -0.61
VPS28-210ENST00000529182 A6NIN4 97 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 PTBP3O95758 552 aaKnown RBP11.24□□□□□ -0.61
VPS28-210ENST00000529182 CST4P01036 141 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 IGHA1P01876 353 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 FAHP16930 419 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 MAP2K3P46734 347 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 BTG1P62324 171 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 PRDX4Q13162 271 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 IL18R1Q13478 541 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 GALEQ14376 348 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 KLHL22Q53GT1 634 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 LAIR2Q6ISS4 152 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 PEG10Q86TG7 708 aaKnown RBP11.24□□□□□ -0.61
VPS28-210ENST00000529182 KLBQ86Z14 1044 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 C8orf59Q8N0T1 100 aaPredicted RBP11.24□□□□□ -0.61
VPS28-210ENST00000529182 SPERTQ8NA61 448 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 C19orf18Q8NEA5 215 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 TFAP2CQ92754 450 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 HPS1Q92902 700 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 ITPKCQ96DU7 683 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 GAL3ST1Q99999 423 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 ZNF665Q9H7R5 613 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 LPAR2Q9HBW0 351 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 C1orf123Q9NWV4 160 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 ERVK13-1Q9NX77 482 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 PIGLQ9Y2B2 252 aa11.24□□□□□ -0.61
VPS28-210ENST00000529182 MALRD1Q5VYJ5 2156 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.23□□□□□ -0.613e-7■■■■□ 19.9
VPS28-210ENST00000529182 ZNF816-ZNF321PA0A0X1KG74 233 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 LRRC30A6NM36 301 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 ANXA2P2A6NMY6 339 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 DHRS3O75911 302 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 ATP6V1G2O95670 118 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 TGFAP01135 160 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 IGHV2-5P01817 119 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 THBS2P35442 1172 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 CDH15P55291 814 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 NANOS3P60323 173 aaKnown RBP11.23□□□□□ -0.61
VPS28-210ENST00000529182 CSNK2BP67870 215 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 RIPPLY1Q0D2K3 151 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 SNCBQ16143 134 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 ZNF181Q2M3W8 571 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 CEP78Q5JTW2 689 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 THAP5Q7Z6K1 395 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 C11orf53Q8IXP5 236 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 ZDHHC23Q8IYP9 409 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 RDH10Q8IZV5 341 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 FTMTQ8N4E7 242 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 BOLLQ8N9W6 283 aaKnown RBP11.23□□□□□ -0.61
VPS28-210ENST00000529182 PLPP7Q8NBV4 271 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 OR1M1Q8NGA1 313 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 OR11L1Q8NGX0 322 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 OR14K1Q8NGZ2 314 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 OR2G2Q8NGZ5 317 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 Q8TCH9 128 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 HPSE2Q8WWQ2 592 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 OR5P3Q8WZ94 311 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 ERGIC1Q969X5 290 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 PELI1Q96FA3 418 aa11.23□□□□□ -0.61
VPS28-210ENST00000529182 METTL17Q9H7H0 456 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms