RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 P04436 131 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 LGALS2P05162 132 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 C2P06681 752 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 GABRA1P14867 456 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 AKR1C4P17516 323 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 NELFEP18615 380 aaKnown RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 FUT3P21217 361 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 ADORA1P30542 326 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 XCR1P46094 333 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 PSMD8P48556 350 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 TTPAP49638 278 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 HNRNPA3P51991 378 aaKnown RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 CD300CQ08708 224 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 ELAVL2Q12926 359 aaKnown RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 MLLT11Q13015 90 aaPredicted RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 SKP2Q13309 424 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 VGLL4Q14135 290 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 PRPSAP1Q14558 356 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 RFX4Q33E94 735 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 SMIM21Q3B7S5 101 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 NHLRC3Q5JS37 347 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 SAMD4BQ5PRF9 694 aaKnown RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 RBM48Q5RL73 367 aaKnown RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 PPM1LQ5SGD2 360 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 LCE1FQ5T754 118 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 SDHAF4Q5VUM1 108 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 RESP18Q5W5W9 173 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 LEMD1Q68G75 181 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 FAHD1Q6P587 224 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 UNQ9370/PRO34162Q6UXP9 181 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 ZNF497Q6ZNH5 498 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 C19orf35Q6ZS72 473 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 ERI1Q8IV48 349 aaKnown RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 RDH10Q8IZV5 341 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 C4orf33Q8N1A6 199 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 INO80EQ8NBZ0 244 aaPredicted RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 LFNGQ8NES3 379 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 OR2Y1Q8NGV0 311 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 OR51F2Q8NH61 342 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 RNASEH2CQ8TDP1 164 aaKnown RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 TFGQ92734 400 aaPredicted RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 RORBQ92753 470 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 STMN2Q93045 179 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 TMEM203Q969S6 136 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.6□□□□□ -1.99
CD44-229ENST00000528672 TLCD1Q96CP7 247 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 C18orf12Q96KH6 178 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 OPRPNQ99935 248 aaPredicted RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 LRRC61Q9BV99 259 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 ILKAPQ9H0C8 392 aaPredicted RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 ZBP1Q9H171 429 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 TLNRD1Q9H1K6 362 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 SYT4Q9H2B2 425 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 REEP4Q9H6H4 257 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 NIPAL2Q9H841 368 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 HEXA-AS1Q9H8Q6 139 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 MIEF1Q9NQG6 463 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 AGPAT4Q9NRZ5 378 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 GLTPQ9NZD2 209 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 RIMS3Q9UJD0 308 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 GNPTGQ9UJJ9 305 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 ZNF391Q9UJN7 358 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 TFR2Q9UP52 801 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 SNX24Q9Y343 169 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 RB1CC1Q8TDY2 1594 aa2.6□□□□□ -1.99
CD44-229ENST00000528672 RIMS1Q86UR5 1692 aaKnown RBP2.6□□□□□ -1.99
CD44-229ENST00000528672 CCDC144AA2RUR9 1427 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 PDS5BQ9NTI5 1447 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 RIMS2Q9UQ26 1411 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 MAGI1Q96QZ7 1491 aaPredicted RBP2.59□□□□□ -1.99
CD44-229ENST00000528672 PKD1L2Q7Z442 2459 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 LOC100131303A0A0U1RQF7 123 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 A0A1W2PPV9 198 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 PSMB11A5LHX3 300 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 GJE1A6NN92 205 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 LEUTXA8MZ59 168 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 C21orf140B9A014 251 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 F5H5T6 163 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 F5H768 121 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 SULT1C2O00338 296 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 FGF16O43320 207 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 CHST10O43529 356 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 RAD1O60671 282 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 SLC19A2O60779 497 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 FCN3O75636 299 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 LYPD3O95274 346 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 FARS2O95363 451 aaKnown RBP2.59□□□□□ -1.99
CD44-229ENST00000528672 SLC2A10O95528 541 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 CCNE2O96020 404 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 IGF2P01344 180 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 MMP1P03956 469 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 KLK1P06870 262 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 CT62P0C5K7 136 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 OR10J4P0C629 311 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 METTL15P1P0C7V9 234 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 ZNF806P0C7X5 589 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 ZNF35P13682 527 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 ZNF43P17038 809 aa2.59□□□□□ -1.99
CD44-229ENST00000528672 KITLGP21583 273 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms