RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 PARP8Q8N3A8 854 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 ZNF454Q8N9F8 522 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 OR1M1Q8NGA1 313 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 OR52H1Q8NGJ2 320 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 NRBF2Q96F24 287 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 PGAM5Q96HS1 289 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 OR10A2Q9H208 303 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 MMADHCQ9H3L0 296 aaPredicted RBP8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 ZNF556Q9HAH1 456 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 C14orf119Q9NWQ9 140 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 DUX4Q9UBX2 424 aa8.66□□□□□ -1.02
PRPF40B-204ENST00000527253 TRAV40A0A0B4J280 105 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 A6NLC8 198 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 M0R129 80 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 PSMD9O00233 223 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 ADAM20O43506 726 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 PRKYO43930 277 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 APOC1P02654 83 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 SFTPBP07988 381 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 PRTN3P24158 256 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 EPHA2P29317 976 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 EFNB1P98172 346 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 BAMBIQ13145 260 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 APOFQ13790 326 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 SLC9A3R2Q15599 337 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 SNAPC1Q16533 368 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 WDR82Q6UXN9 313 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 BRD3OSQ6XYD6 125 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 OR8B12Q8NGG6 310 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 OR8S1Q8NH09 359 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 LRRC29Q8WV35 223 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 PPP1R14AQ96A00 147 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 ITPKCQ96DU7 683 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 TBX15Q96SF7 602 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 TEAD3Q99594 435 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 MS4A7Q9GZW8 240 aaPredicted RBP8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 TLNRD1Q9H1K6 362 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 YY1AP1Q9H869 796 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 SP140LQ9H930 580 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 RNPEPL1Q9HAU8 725 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 PAPOLBQ9NRJ5 636 aaKnown RBP8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 ERVK-18Q9QC07 812 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 COPS3Q9UNS2 423 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 LRP12Q9Y561 859 aa8.65□□□□□ -1.02
PRPF40B-204ENST00000527253 MGAM2Q2M2H8 2515 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 TRAV38-1A0A0B4J264 116 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 hCG_1807616A0A1W2PRN6 198 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 ZNF850A8MQ14 1090 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 DVL1O14640 695 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 CDIPTO14735 213 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 ENSAO43768 121 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 CST4P01036 141 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 TFF1P04155 84 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 MRPL3P09001 348 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 HKR1P10072 659 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 MMP9P14780 707 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 CFHR2P36980 270 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 NPY4RP50391 375 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 PSMA6P60900 246 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 RPS7P62081 194 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 MZT1Q08AG7 82 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 PRDX4Q13162 271 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 PTGES3Q15185 160 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 AWAT1Q58HT5 328 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 RUSC1-AS1Q66K80 236 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 RBMS3Q6XE24 437 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 KRT74Q7RTS7 529 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 GALNT4Q8N4A0 578 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 CSNK2A3Q8NEV1 391 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 OR5K1Q8NHB7 308 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 HPSE2Q8WWQ2 592 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 OR5P3Q8WZ94 311 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 RPL3LQ92901 407 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 TECTBQ96PL2 329 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 CCL13Q99616 98 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 PAPOLGQ9BWT3 736 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 YIPF3Q9GZM5 350 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 RGCCQ9H4X1 137 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 FAM206AQ9NX38 181 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 KAAG1Q9UBP8 84 aa8.64□□□□□ -1.03
PRPF40B-204ENST00000527253 ZNF879B4DU55 563 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 MAGEB4O15481 346 aaPredicted RBP8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 NDUFA2O43678 99 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 CFL1P23528 166 aaKnown RBP8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 KCNJ8Q15842 424 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 ATP6AP1Q15904 470 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 DEFB112Q30KQ8 113 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 FAM76BQ5HYJ3 339 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 DMRTC1Q5HYR2 192 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 WDR38Q5JTN6 314 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 AADACL4Q5VUY2 407 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 SLX4IPQ5VYV7 408 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 CD276Q5ZPR3 534 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 C12orf73Q69YU5 71 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 BTN2A1Q7KYR7 527 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 KRT77Q7Z794 578 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 AMIGO2Q86SJ2 522 aa8.63□□□□□ -1.03
PRPF40B-204ENST00000527253 PIP4P2Q8N4L2 257 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms