RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MZT1Q08AG7 82 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 NPRL3Q12980 569 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ZNF154Q13106 437 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 PLECQ15149 4684 aaKnown RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 MRGPRG-AS1Q2M3A8 158 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 NDUFAF6Q330K2 333 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ARMCX4Q5H9R4 360 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 C10orf128Q5T292 105 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 INTS11Q5TA45 600 aaKnown RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 FAM27BQ5VT28 67 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 HHATQ5VTY9 493 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 OR4F3Q6IEY1 312 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 REEP3Q6NUK4 255 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 TNFAIP8L2Q6P589 184 aaPredicted RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 FIP1L1Q6UN15 594 aaKnown RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 NHLRC1Q6VVB1 395 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ZNF621Q6ZSS3 439 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 LINGO2Q7L985 606 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 SMIM29Q86T20 159 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 LRRC28Q86X40 367 aaPredicted RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 NUDCD3Q8IVD9 361 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ODF3L1Q8IXM7 274 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 CDK20Q8IZL9 346 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 LYG1Q8N1E2 194 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ZCCHC24Q8N2G6 241 aaKnown RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 CADM2Q8N3J6 435 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 KRTCAP2Q8N6L1 136 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 PCYOX1LQ8NBM8 494 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 OR5J2Q8NH18 312 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 OR5AK3PQ8NH89 298 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 CLHC1Q8NHS4 586 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 LINC01006Q8NI28 216 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 SSMEM1Q8WWF3 244 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 DYRK2Q92630 601 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 TMEM54Q969K7 222 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 UPRTQ96BW1 309 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ZNF524Q96C55 264 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 GAL3ST1Q99999 423 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ALG12Q9BV10 488 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 C1QTNF6Q9BXI9 259 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 C20orf27Q9GZN8 174 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 FAM107BQ9H098 131 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 NANOGQ9H9S0 305 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 TPT1P8Q9HAU6 139 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 CDH20Q9HBT6 801 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 C20orf141Q9NUB4 165 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 FGFR1OP2Q9NVK5 253 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 TMEM38BQ9NVV0 291 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 MIOXQ9UGB7 285 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 OPN4Q9UHM6 478 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 WIPI2Q9Y4P8 454 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 INSIG2Q9Y5U4 225 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 NPTNQ9Y639 398 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 STARD9Q9P2P6 4700 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 PCNX3Q9H6A9 2034 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 IGHV3OR16-10A0A075B7F0 116 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 A0A1B0GWJ7 208 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 A0A1W2PR80 420 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 A0A1W2PRG6 482 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 ERICH4A6NGS2 130 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 A6NIZ1 184 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 C12orf71A8MTZ7 269 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 EVPLLA8MZ36 301 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 SRRM5B3KS81 715 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 C5orf58C9J3I9 102 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 F5H0A9 414 aaPredicted RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 H0YL77 283 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 PLPP3O14495 311 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 TSPAN4O14817 238 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 PHYHO14832 338 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 EDF1O60869 148 aaKnown RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 SLC22A3O75751 556 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 CLPXO76031 633 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 ANP32DO95626 131 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 ECDO95905 644 aaPredicted RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 FAM107AO95990 144 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 NPPAP01160 153 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 IFNA14P01570 189 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 HIST1H2ABP04908 130 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 CHRNGP07510 517 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 SFTPBP07988 381 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 CD79AP11912 226 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 GPX2P18283 190 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 KITLGP21583 273 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 GRPRP30550 384 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 CRATP43155 626 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 CAPZA2P47755 286 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 FUT6P51993 359 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 KRTAP10-5P60370 271 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 RAP1BP61224 184 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 BTG1P62324 171 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 RAP1AP62834 184 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 RELQ04864 619 aaPredicted RBP3.2□□□□□ -1.9
USP54-217ENST00000498213 SCRN3Q0VDG4 424 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 BST1Q10588 318 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 MELKQ14680 651 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 RGNQ15493 299 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 SYPL1Q16563 259 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 AANATQ16613 207 aa3.2□□□□□ -1.9
USP54-217ENST00000498213 MS4A18Q3C1V0 323 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms