RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PTRH2Q9Y3E5 179 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 GPR179Q6PRD1 2367 aa14.58□□□□□ -0.07
CCDC88B-210ENST00000494566 AHCTF1Q8WYP5 2266 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 IGHG1P01857 330 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF43P17038 809 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 ZBTB25P24278 435 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 CFPP27918 469 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 PAN3Q58A45 887 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 TMEM17Q86X19 198 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC22A8Q8TCC7 542 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC25A21Q9BQT8 299 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 CHCHD2Q9Y6H1 151 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 A0A0D9SG52 128 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 NME2P22392 152 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 CLDN17P56750 224 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF121P58317 390 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 LPAL2Q16609 132 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 NKAPLQ5M9Q1 402 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 CLVS2Q5SYC1 327 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 H3F3CQ6NXT2 135 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 LYPD6Q86Y78 171 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 PNLDC1Q8NA58 520 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 OR1M1Q8NGA1 313 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 OR4K15Q8NH41 348 aa14.58□□□□□ -0.08
CCDC88B-210ENST00000494566 H0YIZ8 118 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 SERPINA5P05154 406 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 CCL3P10147 92 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 KCNJ3P48549 501 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 AIMP2Q13155 320 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 PCOLCEQ15113 449 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 SGCAQ16586 387 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 MRPL14Q6P1L8 145 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF585AQ6P3V2 769 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 MOB3CQ70IA8 216 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 OR8B12Q8NGG6 310 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 OR2AJ1Q8NGZ0 328 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 METTL8Q9H825 291 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 PILRBQ9UKJ0 227 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 METTL21EPA6NDL7 271 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 H7C2Y5 167 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 AGTR1P30556 359 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 CALCRP30988 508 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 ARFRP1Q13795 201 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 FAM57BQ71RH2 274 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 RNF138Q8WVD3 245 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 LIN37Q96GY3 246 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 UCN2Q96RP3 112 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 GPR84Q9NQS5 396 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC17A5Q9NRA2 495 aa14.57□□□□□ -0.08
CCDC88B-210ENST00000494566 A0A1B0GTI1 187 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 A0A1W2PNV4 684 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNHIT1O43257 154 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 SSX5O60225 188 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 HCKP08631 526 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 PVALBP20472 110 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF260Q3ZCT1 412 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 C1orf100Q5SVJ3 147 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 THEM4Q5T1C6 240 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 PMS2CLQ68D20 193 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 GLIPR1L1Q6UWM5 242 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 LRRC18Q8N456 261 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 ZSCAN4Q8NAM6 433 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 OR6S1Q8NH40 331 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 FAM117AQ9C073 453 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 MEGF11A6BM72 1044 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 EFSO43281 561 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 CRTAPO75718 401 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 UMODP07911 640 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 GLRA1P23415 457 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 TOMM20Q15388 145 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 MICBQ29980 383 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 CCDC157Q569K6 752 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 PHYHD1Q5SRE7 291 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 DTX1Q86Y01 620 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 OR5AP2Q8NGF4 316 aa14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 CDX2Q99626 313 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-210ENST00000494566 A0A0A6YYD4 124 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 LOC390937A0A1W2PQ73 354 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 TTLL8A6PVC2 850 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 WDPCPO95876 746 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF20P17024 532 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 GABREP78334 506 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 MPPED2Q15777 294 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 RAET1LQ5VY80 246 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 DRAM2Q6UX65 266 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 LINC00518Q8N0U6 118 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 PRO3102Q9H379 93 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 C19orf25Q9UFG5 118 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 TMEM218A2RU14 115 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF726A6NNF4 738 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 RAD51DO75771 328 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 DKK1O94907 266 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 SCGB1D2O95969 90 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 PNLIPP16233 465 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF93P35789 620 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF468Q5VIY5 522 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 DEGS2Q6QHC5 323 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF283Q8N7M2 679 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF385AQ96PM9 386 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 C20orf24Q9BUV8 137 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms