RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 GFYI3L273 518 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 K7EP13 123 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 M0R143 59 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 AIPO00170 330 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 DFFAO00273 331 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 EEF2KO00418 725 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PDXKO00764 312 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MYL12BO14950 172 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SLC16A4O15374 487 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PPIHO43447 177 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF354AO60765 605 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR2J2O76002 312 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 B3GAT3O94766 335 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MPC2O95563 127 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CPNE6O95741 557 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TTC4O95801 387 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TXNDC12O95881 172 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CFDP00746 253 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PPBPP02775 128 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CSF2P04141 144 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 THY1P04216 161 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ARG1P05089 322 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 HTR1AP08908 422 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CCL2P13500 99 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 HSD17B1P14061 328 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ETS1P14921 441 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SELEP16581 610 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MYL12AP19105 171 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 BCL3P20749 454 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SERPINA2P20848 420 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CNR1P21554 472 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TBXA2RP21731 343 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CCNOP22674 350 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MYL9P24844 172 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ACKR3P25106 362 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 HLA-DMAP28067 261 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TEAD1P28347 426 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SRD5A2P31213 254 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CD52P31358 61 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RPA3P35244 121 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CEACAM6P40199 344 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ID1P41134 155 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 NAA10P41227 235 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MAGEA6P43360 314 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 KCNJ1P48048 391 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TGM4P49221 684 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 GSK3BP49841 420 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 STK19P49842 368 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 KLK7P49862 253 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 HLCSP50747 726 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TDGF1P3P51864 188 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 EMP2P54851 167 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ATP5J2P56134 94 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RGS8P57771 180 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 VSX2P58304 361 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 DNAJB13P59910 316 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ERVPABLB-1P60509 514 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 STXBP1P61764 594 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RAP1AP62834 184 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PPIAP62937 165 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RPS27AP62979 156 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 DYNLL1P63167 89 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 NTHL1P78549 312 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SLC7A9P82251 487 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 GTF2BQ00403 316 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CDK6Q00534 326 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OGDHQ02218 1023 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MXD1Q05195 221 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF616Q08AN1 781 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 KLRB1Q12918 225 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SRSF6Q13247 344 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SLAMF1Q13291 335 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MAB21L1Q13394 359 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 GAMTQ14353 236 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 QPRTQ15274 297 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TMED2Q15363 201 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RSU1Q15404 277 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RPS6KA1Q15418 735 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CHI3L2Q15782 390 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 IMPG1Q17R60 797 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF630Q2M218 657 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 EXOC3L2Q2M3D2 409 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ALKBH6Q3KRA9 238 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ADPRMQ3LIE5 342 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 POM121L1PQ3SYA9 428 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CDNFQ49AH0 187 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 NKAIN1Q4KMZ8 207 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 AGKQ53H12 422 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 VWA2Q5GFL6 755 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 NHSL2Q5HYW2 709 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SYT6Q5T7P8 510 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 GPR157Q5UAW9 335 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 NCR3LG1Q68D85 454 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF776Q68DI1 518 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MED27Q6P2C8 311 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 FAM199XQ6PEV8 388 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF773Q6PK81 442 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM270Q6UE05 265 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 AFTPHQ6ULP2 937 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PLET1Q6UQ28 207 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms