RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GYPAP02724 150 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 LYNP07948 512 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 SFTPBP07988 381 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 AMY2BP19961 511 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 ALOX5APP20292 161 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 PAICSP22234 425 aaKnown RBP11.69□□□□□ -0.54
UPF3A-204ENST00000475218 PRTN3P24158 256 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 DAPP51397 102 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 TIGD6Q17RP2 521 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 AWAT1Q58HT5 328 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 TEX36Q5VZQ5 186 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 BTNL3Q6UXE8 466 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 SPERTQ8NA61 448 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 OR1M1Q8NGA1 313 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 OR52H1Q8NGJ2 320 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 TLNRD1Q9H1K6 362 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 MMADHCQ9H3L0 296 aaPredicted RBP11.69□□□□□ -0.54
UPF3A-204ENST00000475218 A6NLC8 198 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 ANKRD30BLA7E2S9 258 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 GSC2O15499 205 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 ADAM20O43506 726 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 TIPRLO75663 272 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 HMGN1P05114 100 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 H2BFMP0C1H6 154 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 ANXA8P13928 327 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 WDR82Q6UXN9 313 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 BRD3OSQ6XYD6 125 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 THEM6Q8WUY1 208 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 ITPKCQ96DU7 683 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 TBX15Q96SF7 602 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 LRP12Q9Y561 859 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 MEGF8Q7Z7M0 2845 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 HKR1P10072 659 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 HOXB6P17509 224 aaKnown RBP11.68□□□□□ -0.54
UPF3A-204ENST00000475218 EPHA2P29317 976 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 BNIP1Q12981 228 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 APOFQ13790 326 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 SLC9A3R2Q15599 337 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 GFOD2Q3B7J2 385 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 ZNF454Q8N9F8 522 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 OR8B12Q8NGG6 310 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 HPSE2Q8WWQ2 592 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 PGAM5Q96HS1 289 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 TECTBQ96PL2 329 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 RAB3IPQ96QF0 476 aaPredicted RBP11.68□□□□□ -0.54
UPF3A-204ENST00000475218 MS4A7Q9GZW8 240 aaPredicted RBP11.68□□□□□ -0.54
UPF3A-204ENST00000475218 OR10A2Q9H208 303 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 PRDM13Q9H4Q3 707 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 ZNF556Q9HAH1 456 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 C14orf119Q9NWQ9 140 aa11.68□□□□□ -0.54
UPF3A-204ENST00000475218 TRAV38-1A0A0B4J264 116 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.67□□□□□ -0.54
UPF3A-204ENST00000475218 M0R129 80 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 ENSAO43768 121 aaKnown RBP11.67□□□□□ -0.54
UPF3A-204ENST00000475218 PRKYO43930 277 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 APOC1P02654 83 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 RNASE1P07998 156 aaKnown RBP11.67□□□□□ -0.54
UPF3A-204ENST00000475218 CFHR2P36980 270 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 NPY4RP50391 375 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 CRISP1P54107 249 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 PSMA6P60900 246 aaKnown RBP11.67□□□□□ -0.54
UPF3A-204ENST00000475218 EFNB1P98172 346 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 BAMBIQ13145 260 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 SLC35D3Q5M8T2 416 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 RUSC1-AS1Q66K80 236 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 BCDIN3DQ7Z5W3 292 aaKnown RBP11.67□□□□□ -0.54
UPF3A-204ENST00000475218 OR8S1Q8NH09 359 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 LRRC29Q8WV35 223 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 SIRPDQ9H106 197 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 RNPEPL1Q9HAU8 725 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 KAAG1Q9UBP8 84 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 COPS3Q9UNS2 423 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 hCG_1807616A0A1W2PRN6 198 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 CLDN34H7C241 214 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 PSMD9O00233 223 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 DVL1O14640 695 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 MITFO75030 526 aaPredicted RBP11.67□□□□□ -0.54
UPF3A-204ENST00000475218 DCTDP32321 178 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 DEFB112Q30KQ8 113 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 KRT74Q7RTS7 529 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 GALNT4Q8N4A0 578 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 OR5P3Q8WZ94 311 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 NRBF2Q96F24 287 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 TEAD3Q99594 435 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 PAPOLGQ9BWT3 736 aaKnown RBP11.67□□□□□ -0.54
UPF3A-204ENST00000475218 RGCCQ9H4X1 137 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 PAPOLBQ9NRJ5 636 aaKnown RBP11.67□□□□□ -0.54
UPF3A-204ENST00000475218 FAM206AQ9NX38 181 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 TVP23BQ9NYZ1 205 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 ERVK-18Q9QC07 812 aa11.67□□□□□ -0.54
UPF3A-204ENST00000475218 TRRAPQ9Y4A5 3859 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 ZNF850A8MQ14 1090 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 ZNF879B4DU55 563 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 CDIPTO14735 213 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 CST4P01036 141 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 IGLV3-1P01715 115 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 TFF1P04155 84 aa11.66□□□□□ -0.54
UPF3A-204ENST00000475218 MRPL3P09001 348 aaKnown RBP11.66□□□□□ -0.54
UPF3A-204ENST00000475218 CFL1P23528 166 aaKnown RBP11.66□□□□□ -0.54
UPF3A-204ENST00000475218 PRDX4Q13162 271 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms