RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 WDR82Q6UXN9 313 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 ZNF621Q6ZSS3 439 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 DPY19L4Q7Z388 723 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 MAPKAPK5-AS1Q8N8E1 139 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 TMEM185AQ8NFB2 350 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 OR10Z1Q8NGY1 313 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 LRGUKQ96M69 825 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 RAB3IPQ96QF0 476 aaPredicted RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 HIPK2Q9H2X6 1198 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 RAD21L1Q9H4I0 556 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 TUBA4BQ9H853 241 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 WDR76Q9H967 626 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 PAPOLBQ9NRJ5 636 aaKnown RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 EMCNQ9ULC0 261 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 POLR1DQ9Y2S0 133 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 HILPDAQ9Y5L2 63 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 GGT3PA6NGU5 568 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.27□□□□□ -1.41
USP54-211ENST00000474929 PLIN3O60664 434 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 CDK2AP2O75956 126 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 OR8U9P0C7N5 309 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 SELLP14151 372 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 ARSBP15848 533 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 SERPINB5P36952 375 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 GNALP38405 381 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 CAPZA1P52907 286 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 RPL27P61353 136 aaKnown RBP6.27□□□□□ -1.41
USP54-211ENST00000474929 FOXE3Q13461 319 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 PMS2P11Q13670 270 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 PNLIPRP3Q17RR3 467 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 LINC00114Q6XXX2 140 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 TSEN54Q7Z6J9 526 aaKnown RBP6.27□□□□□ -1.41
USP54-211ENST00000474929 CYB561A3Q8NBI2 242 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 GJC3Q8NFK1 279 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 NFKBIDQ8NI38 313 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 SLC7A6Q92536 515 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 SLCO4A1Q96BD0 722 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 CCDC134Q9H6E4 229 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 PPCSQ9HAB8 311 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 GIMAP2Q9UG22 337 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 ANGPT4Q9Y264 503 aa6.27□□□□□ -1.41
USP54-211ENST00000474929 ANKRD30BLA7E2S9 258 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 C12orf77C9JDV5 145 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 H3BSH0 61 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 AHCYL1O43865 530 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 PTP4A3O75365 173 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 DBHP09172 617 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 HTR1DP28221 377 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 DDOSTP39656 456 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 MVDP53602 400 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 ZNF616Q08AN1 781 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 SNCBQ16143 134 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 SPANXN4Q5MJ08 99 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 NANOGP8Q6NSW7 305 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 ZNF782Q6ZMW2 699 aaPredicted RBP6.26□□□□□ -1.41
USP54-211ENST00000474929 SLC35E3Q7Z769 313 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 PATL1Q86TB9 770 aaKnown RBP6.26□□□□□ -1.41
USP54-211ENST00000474929 GTSCR1Q86UQ5 136 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 STPG2Q8N412 459 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 RNF152Q8N8N0 203 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 OR11H1Q8NG94 326 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 ANGPTL6Q8NI99 470 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 BCAS4Q8TDM0 211 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 ROPN1BQ9BZX4 212 aaPredicted RBP6.26□□□□□ -1.41
USP54-211ENST00000474929 WDR55Q9H6Y2 383 aaPredicted RBP6.26□□□□□ -1.41
USP54-211ENST00000474929 ROPN1Q9HAT0 212 aaPredicted RBP6.26□□□□□ -1.41
USP54-211ENST00000474929 ABCB9Q9NP78 766 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 EMC7Q9NPA0 242 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 C19orf12Q9NSK7 152 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 NLKQ9UBE8 527 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 RAB21Q9UL25 225 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 CEPT1Q9Y6K0 416 aa6.26□□□□□ -1.41
USP54-211ENST00000474929 C17orf98A8MV24 154 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 AP4M1O00189 453 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 KPNA4O00629 521 aaPredicted RBP6.25□□□□□ -1.41
USP54-211ENST00000474929 RFXANKO14593 260 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 RGS16O15492 202 aaPredicted RBP6.25□□□□□ -1.41
USP54-211ENST00000474929 FGF16O43320 207 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 ANP32DO95626 131 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 AMY1AP04745 511 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 AMY2AP04746 511 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 RPLP1P05386 114 aaKnown RBP6.25□□□□□ -1.41
USP54-211ENST00000474929 AMY2BP19961 511 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 SDHAP31040 664 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 ISL1P61371 349 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 MXRA7P84157 204 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 FADDQ13158 208 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 TOP3AQ13472 1001 aaPredicted RBP6.25□□□□□ -1.41
USP54-211ENST00000474929 TIGD6Q17RP2 521 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 KRT71Q3SY84 523 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 CCDC92Q53HC0 331 aaPredicted RBP6.25□□□□□ -1.41
USP54-211ENST00000474929 ALG10Q5BKT4 473 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 LCN8Q6JVE9 175 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 CCDC144NLQ6NUI1 221 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 TMPRSS11FQ6ZWK6 438 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.25□□□□□ -1.41
USP54-211ENST00000474929 Q8N1Y9 231 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 FTMTQ8N4E7 242 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 OR1M1Q8NGA1 313 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 CREB3L1Q96BA8 519 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms