RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 GMFBP60983 142 aa13.8□□□□□ -0.2
USP40-212ENST00000473191 CBX1P83916 185 aa13.8□□□□□ -0.2
USP40-212ENST00000473191 TEX36Q5VZQ5 186 aa13.8□□□□□ -0.2
USP40-212ENST00000473191 PGAM5Q96HS1 289 aa13.8□□□□□ -0.2
USP40-212ENST00000473191 CCL13Q99616 98 aa13.8□□□□□ -0.2
USP40-212ENST00000473191 TOR3AQ9H497 397 aa13.8□□□□□ -0.2
USP40-212ENST00000473191 OPA3Q9H6K4 179 aa13.8□□□□□ -0.2
USP40-212ENST00000473191 POMPQ9Y244 141 aa13.8□□□□□ -0.2
USP40-212ENST00000473191 NOP16Q9Y3C1 178 aaKnown RBP13.8□□□□□ -0.2
USP40-212ENST00000473191 CENPVL3A0A0U1RRI6 287 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 TCRBV3S1A0A5B6 114 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 M0R129 80 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 CDIPTO14735 213 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 TMPRSS2O15393 492 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 E2F6O75461 281 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 SELLP14151 372 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 DDOSTP39656 456 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 FLOT2Q14254 428 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 BTN2A1Q7KYR7 527 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 SHFQ7M4L6 423 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 BCDIN3DQ7Z5W3 292 aaKnown RBP13.79□□□□□ -0.2
USP40-212ENST00000473191 PDZD9Q8IXQ8 264 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 FAM216BQ8N7L0 139 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 SPERTQ8NA61 448 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 OR5T2Q8NGG2 359 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 OR8B12Q8NGG6 310 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 RPL3LQ92901 407 aaKnown RBP13.79□□□□□ -0.2
USP40-212ENST00000473191 PPP1R14AQ96A00 147 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 ITPKCQ96DU7 683 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 PAPOLGQ9BWT3 736 aaKnown RBP13.79□□□□□ -0.2
USP40-212ENST00000473191 TTTY10Q9BZA0 68 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 SIRPDQ9H106 197 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 WDR13Q9H1Z4 485 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 OR10A2Q9H208 303 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 C14orf119Q9NWQ9 140 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 FAM53CQ9NYF3 392 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 NBEAL1Q6ZS30 2694 aa13.79□□□□□ -0.2
USP40-212ENST00000473191 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.78□□□□□ -0.2
USP40-212ENST00000473191 CCDC182A6NF36 153 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 ZNF850A8MQ14 1090 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 ZNF879B4DU55 563 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 GYG2O15488 501 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 TOX4O94842 621 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 MRPL3P09001 348 aaKnown RBP13.78□□□□□ -0.2
USP40-212ENST00000473191 MDKP21741 143 aaPredicted RBP13.78□□□□□ -0.2
USP40-212ENST00000473191 PAICSP22234 425 aaKnown RBP13.78□□□□□ -0.2
USP40-212ENST00000473191 MTNR1AP48039 350 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 NPY4RP50391 375 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 DAPP51397 102 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 ARF6P62330 175 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 APOFQ13790 326 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 GK3PQ14409 553 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 WDR38Q5JTN6 314 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 HPSE2Q8WWQ2 592 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 ST8SIA4Q92187 359 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 WDFY2Q96P53 400 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 ZNF747Q9BV97 191 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 UNKLQ9H9P5 680 aaKnown RBP13.78□□□□□ -0.2
USP40-212ENST00000473191 SNTG1Q9NSN8 517 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 COPS3Q9UNS2 423 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 LRP12Q9Y561 859 aa13.78□□□□□ -0.2
USP40-212ENST00000473191 CLDN34H7C241 214 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 TIPRLO75663 272 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 ALOX5APP20292 161 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 FOXL1Q12952 345 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 PRDX4Q13162 271 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 KCNJ8Q15842 424 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 PAPD5Q8NDF8 572 aaKnown RBP13.77□□□□□ -0.21
USP40-212ENST00000473191 OR52H1Q8NGJ2 320 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 BCAS4Q8TDM0 211 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 PIGCQ92535 297 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 LHX4Q969G2 390 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 SLC25A28Q96A46 364 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 TLNRD1Q9H1K6 362 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 PRDM13Q9H4Q3 707 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 RNPEPL1Q9HAU8 725 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 SLC25A19Q9HC21 320 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 TVP23BQ9NYZ1 205 aa13.77□□□□□ -0.21
USP40-212ENST00000473191 TRRAPQ9Y4A5 3859 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 PRODHO43272 600 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 SPRY1O43609 319 aaPredicted RBP13.76□□□□□ -0.21
USP40-212ENST00000473191 MITFO75030 526 aaPredicted RBP13.76□□□□□ -0.21
USP40-212ENST00000473191 HMGN1P05114 100 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 EPHA2P29317 976 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 PSMA6P60900 246 aaKnown RBP13.76□□□□□ -0.21
USP40-212ENST00000473191 RPS7P62081 194 aaKnown RBP13.76□□□□□ -0.21
USP40-212ENST00000473191 SRSF4Q08170 494 aaKnown RBP13.76□□□□□ -0.21
USP40-212ENST00000473191 GPR157Q5UAW9 335 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 C16orf87Q6PH81 154 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 Q6YL49 198 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 RHOUQ7L0Q8 258 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.76□□□□□ -0.21
USP40-212ENST00000473191 OR5P3Q8WZ94 311 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 PKP2Q99959 881 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 CADM1Q9BY67 442 aaKnown RBP13.76□□□□□ -0.21
USP40-212ENST00000473191 ZNF556Q9HAH1 456 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 KAAG1Q9UBP8 84 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 DNAJB9Q9UBS3 223 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 DNAJB11Q9UBS4 358 aa13.76□□□□□ -0.21
USP40-212ENST00000473191 FAM181BA6NEQ2 426 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms