RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 DEFB112Q30KQ8 113 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 GPR157Q5UAW9 335 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 TRPM8Q7Z2W7 1104 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 PAPD5Q8NDF8 572 aaKnown RBP13.5□□□□□ -0.25
COL9A3-208ENST00000469802 LRRC29Q8WV35 223 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 PAPOLGQ9BWT3 736 aaKnown RBP13.5□□□□□ -0.25
COL9A3-208ENST00000469802 SLC25A19Q9HC21 320 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 RHBDD3Q9Y3P4 386 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 PCDHGB1Q9Y5G3 927 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 TRRAPQ9Y4A5 3859 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 SRRM5B3KS81 715 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 P2RY10O00398 339 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 GNGT2O14610 69 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 DVL1O14640 695 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 E2F6O75461 281 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 HMGN1P05114 100 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 H2BFMP0C1H6 154 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 ANXA8P13928 327 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 MUC1P15941 1255 aaPredicted RBP13.49□□□□□ -0.25
COL9A3-208ENST00000469802 ACKR3P25106 362 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 FLOT2Q14254 428 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 SNCBQ16143 134 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 GFOD2Q3B7J2 385 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 DNAL1Q4LDG9 190 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 SLC35D3Q5M8T2 416 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 RUSC1-AS1Q66K80 236 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 CPOQ8IVL8 374 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 PNLDC1Q8NA58 520 aaKnown RBP13.49□□□□□ -0.25
COL9A3-208ENST00000469802 BBS1Q8NFJ9 593 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 SLC7A6OSQ96CW6 309 aaPredicted RBP13.49□□□□□ -0.25
COL9A3-208ENST00000469802 PGAM5Q96HS1 289 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 WDFY2Q96P53 400 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 PCGF1Q9BSM1 259 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 BRD7Q9NPI1 651 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 DNAJB9Q9UBS3 223 aa13.49□□□□□ -0.25
COL9A3-208ENST00000469802 IGHV3OR15-7A0A075B7D8 119 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 A0A1B0GW55 424 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 TMPRSS2O15393 492 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 HOXA3O43365 443 aaPredicted RBP13.48□□□□□ -0.25
COL9A3-208ENST00000469802 SPRY1O43609 319 aaPredicted RBP13.48□□□□□ -0.25
COL9A3-208ENST00000469802 FKBP6O75344 327 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 TOX4O94842 621 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 ECDO95905 644 aaPredicted RBP13.48□□□□□ -0.25
COL9A3-208ENST00000469802 DUX4L2P0CJ85 424 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 DUX4L3P0CJ86 424 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 DUX4L4P0CJ87 422 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 DUX4L5P0CJ88 424 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 DUX4L6P0CJ89 424 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 DUX4L7P0CJ90 424 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 ALOX5APP20292 161 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 PRKACGP22612 351 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 NAA10P41227 235 aaPredicted RBP13.48□□□□□ -0.25
COL9A3-208ENST00000469802 IL13RA1P78552 427 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 CBX1P83916 185 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 DUX4L9Q6RFH8 374 aaPredicted RBP13.48□□□□□ -0.25
COL9A3-208ENST00000469802 SHISA2Q6UWI4 295 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 KRT74Q7RTS7 529 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 GALNT4Q8N4A0 578 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 FTMTQ8N4E7 242 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 OR8B12Q8NGG6 310 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 C12orf43Q96C57 262 aaKnown RBP13.48□□□□□ -0.25
COL9A3-208ENST00000469802 LYZL4Q96KX0 146 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 FGF23Q9GZV9 251 aaPredicted RBP13.48□□□□□ -0.25
COL9A3-208ENST00000469802 RASSF4Q9H2L5 321 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 NIPAL2Q9H841 368 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 ZNF556Q9HAH1 456 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 DUX4Q9UBX2 424 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 RPUSD1Q9UJJ7 312 aaKnown RBP13.48□□□□□ -0.25
COL9A3-208ENST00000469802 ZNF391Q9UJN7 358 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 POMPQ9Y244 141 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 MPC1Q9Y5U8 109 aa13.48□□□□□ -0.25
COL9A3-208ENST00000469802 CENPVL3A0A0U1RRI6 287 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 ANXA2P2A6NMY6 339 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 GYG2O15488 501 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 CST4P01036 141 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 GNALP38405 381 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 ELF3P78545 371 aaPredicted RBP13.47□□□□□ -0.25
COL9A3-208ENST00000469802 IL5RAQ01344 420 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 POU4F2Q12837 409 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 MICBQ29980 383 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 WDR38Q5JTN6 314 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 PRR31Q5SQ13 230 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 STUMQ69YW2 141 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 C16orf87Q6PH81 154 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 Q6YL49 198 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 BTN2A1Q7KYR7 527 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 SPATA24Q86W54 205 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.47□□□□□ -0.25
COL9A3-208ENST00000469802 FGFRL1Q8N441 504 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 THEM6Q8WUY1 208 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 HPSE2Q8WWQ2 592 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 DNAJC9Q8WXX5 260 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 OR5P3Q8WZ94 311 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 YY1AP1Q9H869 796 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 ABCB9Q9NP78 766 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 NOX4Q9NPH5 578 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 FAM53CQ9NYF3 392 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 LRP12Q9Y561 859 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 MEGF8Q7Z7M0 2845 aa13.47□□□□□ -0.25
COL9A3-208ENST00000469802 CCDC182A6NF36 153 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms