RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	POLR2J	P52435	117 aa	Known RBP	4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	CSNK2B	P67870	215 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	CKAP4	Q07065	602 aa	Known RBP	4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	SCRN3	Q0VDG4	424 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	FADD	Q13158	208 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	SELPLG	Q14242	412 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	CNN3	Q15417	329 aa	Known RBP	4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR8G1	Q15617	311 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	PCK2	Q16822	640 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	ALG10	Q5BKT4	473 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	MEST	Q5EB52	335 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	TEX36	Q5VZQ5	186 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	COLCA1	Q6ZS62	124 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	ARMC8	Q8IUR7	673 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	FUNDC1	Q8IVP5	155 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR2AE1	Q8NHA4	323 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	SVIP	Q8NHG7	77 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	C8orf46	Q8TAG6	207 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	LRRC29	Q8WV35	223 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	STON2	Q8WXE9	905 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	ERGIC1	Q969X5	290 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	APOBEC3D	Q96AK3	386 aa	Predicted RBP	4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	TAMM41	Q96BW9	452 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	RASD2	Q96D21	266 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	DUS3L	Q96G46	650 aa	Known RBP	4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511		Q96M85	177 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	RCHY1	Q96PM5	261 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR52B2	Q96RD2	323 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZBTB18	Q99592	522 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	CPPED1	Q9BRF8	314 aa	Predicted RBP	4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	ALG12	Q9BV10	488 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	WDR13	Q9H1Z4	485 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	RERGL	Q9H628	205 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	GRPEL1	Q9HAV7	217 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	TUBG2	Q9NRH3	451 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	SLC23A1	Q9UHI7	598 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	HAO1	Q9UJM8	370 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	ADAM18	Q9Y3Q7	739 aa		4.21	□□□□□ -1.74
PTPN4-209	ENST00000469511	TNC	P24821	2201 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	hCG_1807616	A0A1W2PRN6	198 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	MEX3A	A1L020	520 aa	Known RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	RBMY1B	A6NDE4	496 aa	Known RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	RBMY1E	A6NEQ0	496 aa	Known RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511		A6NLC8	198 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	CD300LB	A8K4G0	201 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511		F5H5K5	113 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511		H3BUI4	141 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	DCTN6	O00399	190 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	NDUFA2	O43678	99 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	ACSM4	P0C7M7	580 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	RBMY1D	P0C7P1	496 aa	Known RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	KIT	P10721	976 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	PSKH1	P11801	424 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	COX7A1	P24310	79 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	VDAC2	P45880	294 aa	Predicted RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	RGS6	P49758	472 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	LUM	P51884	338 aa	Predicted RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	HIST1H3A	P68431	136 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZNF92	Q03936	586 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	ACSM1	Q08AH1	577 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	SNAI3	Q3KNW1	292 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	KRTAP27-1	Q3LI81	207 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	HIST2H3PS2	Q5TEC6	136 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	CFAP77	Q6ZQR2	320 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	LCNL1	Q6ZST4	164 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	HIST2H3A	Q71DI3	136 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	KRT73	Q86Y46	540 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	LINC00346	Q8IVM7	164 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	LNX2	Q8N448	690 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	LINC00471	Q8N535	108 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR51A7	Q8NH64	312 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	LIPH	Q8WWY8	451 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	TSSK2	Q96PF2	358 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	GAFA1	Q96PS6	74 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	ADAT1	Q9BUB4	502 aa	Known RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	SPATA5L1	Q9BVQ7	753 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	PRSS22	Q9GZN4	317 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	C11orf54	Q9H0W9	315 aa	Predicted RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	FAM234A	Q9H0X4	552 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	EVA1A	Q9H8M9	152 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	THUMPD1	Q9NXG2	353 aa	Known RBP	4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZNF391	Q9UJN7	358 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	RPS6KA6	Q9UK32	745 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	SLC13A4	Q9UKG4	626 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	TCF19	Q9Y242	345 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	LHFPL6	Q9Y693	200 aa		4.2	□□□□□ -1.74
PTPN4-209	ENST00000469511	PRORSD1P	A6NEY8	169 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	FAM90A8P	A6NJQ4	464 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	NPIPB13	A6NJU9	1138 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	NPIPB4	C9JG80	1138 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	F2RL2	O00254	374 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	NDUFB3	O43676	98 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	SLC16A7	O60669	478 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	PEX14	O75381	377 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZFPL1	O95159	310 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	DUS4L	O95620	317 aa	Known RBP	4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	IGF2	P01344	180 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	LCAT	P04180	440 aa		4.19	□□□□□ -1.74
PTPN4-209	ENST00000469511	CD1A	P06126	327 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms