RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ZNF12P17014 697 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 EGR1P18146 543 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 PRDX6P30041 224 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 SLC6A6P31641 620 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 MDH2P40926 338 aaKnown RBP6.06□□□□□ -1.44
USP54-208ENST00000461520 ERFP50548 548 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 SMIM11AP58511 58 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 SUMO2P61956 95 aaKnown RBP6.06□□□□□ -1.44
USP54-208ENST00000461520 UBA52P62987 128 aaKnown RBP6.06□□□□□ -1.44
USP54-208ENST00000461520 COX10Q12887 443 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ZNF154Q13106 437 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 SEC23BQ15437 767 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ZNF181Q2M3W8 571 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 RFX4Q33E94 735 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ESCO2Q56NI9 601 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ARMCX4Q5H9R4 360 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 OR2T2Q6IF00 324 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 RBMS3Q6XE24 437 aaKnown RBP6.06□□□□□ -1.44
USP54-208ENST00000461520 COLCA1Q6ZS62 124 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 NANOGP1Q8N7R0 232 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 C3orf56Q8N813 242 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ATG16L2Q8NAA4 619 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 OR52J3Q8NH60 311 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 SGMS2Q8NHU3 365 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ZNF582Q96NG8 517 aaPredicted RBP6.06□□□□□ -1.44
USP54-208ENST00000461520 TSSK2Q96PF2 358 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 GPA33Q99795 319 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 COQ7Q99807 217 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 SLC30A2Q9BRI3 323 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 FUZQ9BT04 418 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 MYLK2Q9H1R3 596 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 OR52D1Q9H346 318 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ESM1Q9NQ30 184 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 MMP26Q9NRE1 261 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 PTTG3PQ9NZH4 202 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ADA2Q9NZK5 511 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 OR5V1Q9UGF6 321 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 NUP50Q9UKX7 468 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 B9D1Q9UPM9 204 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 LRCH1Q9Y2L9 728 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 INSIG2Q9Y5U4 225 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 AUP1Q9Y679 476 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 LHFPL6Q9Y693 200 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 TGP01266 2768 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 TANC2Q9HCD6 1990 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 IGLV1-36A0A0B4J1U3 117 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 A0A1B0GWJ7 208 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 CEACAM18A8MTB9 384 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 IQCF6A8MYZ5 107 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 DCTN6O00399 190 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 RGS10O43665 173 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 DIRAS1O95057 198 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 GADD45GO95257 159 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 PPP1R3DO95685 299 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 RENP00797 406 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 WNT2P09544 360 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 PPIAL4GP0DN37 164 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 HIST1H1CP16403 213 aaKnown RBP6.05□□□□□ -1.44
USP54-208ENST00000461520 SELEP16581 610 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 IFNGR2P38484 337 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 CENPAP49450 140 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 SRP9P49458 86 aaKnown RBP6.05□□□□□ -1.44
USP54-208ENST00000461520 SEC61A1P61619 476 aaKnown RBP6.05□□□□□ -1.44
USP54-208ENST00000461520 ECH1Q13011 328 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 MEP1BQ16820 701 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 KRTAP27-1Q3LI81 207 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 SLC36A3Q495N2 470 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 OTPQ5XKR4 325 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 AWAT2Q6E213 333 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 LEG1Q6P5S2 330 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 C1orf87Q8N0U7 546 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 OR5AS1Q8N127 324 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 OR6V1Q8N148 313 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 FAM86B1Q8N7N1 296 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 SLC26A10Q8NG04 563 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 OR10AD1Q8NGE0 317 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 FANK1Q8TC84 345 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 C22orf15Q8WYQ4 148 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 ERGIC1Q969X5 290 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 SPSB4Q96A44 273 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 MCUR1Q96AQ8 359 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 PYURFQ96I23 114 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 ERMAPQ96PL5 475 aaPredicted RBP6.05□□□□□ -1.44
USP54-208ENST00000461520 FYTTD1Q96QD9 318 aaKnown RBP6.05□□□□□ -1.44
USP54-208ENST00000461520 NMNAT3Q96T66 252 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 ELAC2Q9BQ52 826 aaKnown RBP6.05□□□□□ -1.44
USP54-208ENST00000461520 HCAR1Q9BXC0 346 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 C1QTNF5Q9BXJ0 243 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 TMEM165Q9HC07 324 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 TMEM100Q9NV29 134 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 MIOXQ9UGB7 285 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 PPIAL4AQ9Y536 164 aa6.05□□□□□ -1.44
USP54-208ENST00000461520 PKD1L1Q8TDX9 2849 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 LRRC30A6NM36 301 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 F5H5K5 113 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 H0YL77 283 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 MLNRO43193 412 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 IDH3BO43837 385 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 OR10H3O60404 316 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 CYB5R3P00387 301 aaPredicted RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms