RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NTNG2Q96CW9 530 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 ASB16Q96NS5 453 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 DGAT2Q96PD7 388 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 GAL3ST4Q96RP7 486 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 CDC6Q99741 560 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 MESP1Q9BRJ9 268 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 LPAR5Q9H1C0 372 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 HRASLS2Q9NWW9 162 aa10.38□□□□□ -0.75
CPSF3-202ENST00000460593 RP1P56715 2156 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF726A6NNF4 738 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 NSA2O95478 260 aaKnown RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 QDPRP09417 244 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 JMJD7P0C870 316 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 LYL1P12980 280 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 CDX1P47902 265 aaPredicted RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 HAGHQ16775 308 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 RSPO4Q2I0M5 234 aaPredicted RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 RPUSD3Q6P087 351 aaKnown RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 FAM213BQ8TBF2 198 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 POM121Q96HA1 1249 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 CNTNAP3Q9BZ76 1288 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 NXF5Q9H1B4 397 aaKnown RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 H0YL77 283 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 SLC33A1O00400 549 aaPredicted RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 SCDO00767 359 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 SRSF10O75494 262 aaKnown RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 SNRPCP09234 159 aaKnown RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 FABP4P15090 132 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 RPS2P15880 293 aaKnown RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 GPR3P46089 330 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 OR3A2P47893 321 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 SSTP61278 116 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 RPL27P61353 136 aaKnown RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 CSNK2A1P68400 391 aaPredicted RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 ROM1Q03395 351 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 IL15RAQ13261 267 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 PLXDC2Q6UX71 529 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 TMEM182Q6ZP80 229 aaPredicted RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 CSNK2A3Q8NEV1 391 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 MFSD8Q8NHS3 518 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 HOXB13Q92826 284 aaPredicted RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 PMM1Q92871 262 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 DEFB118Q96PH6 123 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 GFOD1Q9NXC2 390 aa10.37□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF107Q9UII5 783 aaPredicted RBP10.37□□□□□ -0.75
CPSF3-202ENST00000460593 IGKV1D-8A0A087WSZ0 117 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 LOC390937A0A1W2PQ73 354 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 MEGF11A6BM72 1044 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 CDRT15L2A8MXV6 281 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 SYT7O43581 403 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 NUDT21O43809 227 aaKnown RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 UTS2O95399 124 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 BGLAPP02818 100 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF93P35789 620 aaPredicted RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 ZNF117Q03924 483 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 KIR2DS3Q14952 304 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 KHDC3LQ587J8 217 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 TSPO2Q5TGU0 170 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 C17orf78Q8N4C9 275 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 OR1J1Q8NGS3 322 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 Q8WTZ3 238 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 SLC22A18Q96BI1 424 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 MISP3Q96FF7 219 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 C19orf12Q9NSK7 152 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 PARPBPQ9NWS1 579 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 MED29Q9NX70 200 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 TRIOO75962 3097 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 MYO7BQ6PIF6 2116 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 LINC01553A4QN01 128 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 C2orf72A6NCS6 295 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 CRTAPO75718 401 aaPredicted RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 CELA2BP08218 269 aaPredicted RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 MPZP25189 248 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 LSM6P62312 80 aaKnown RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 ACY1Q03154 408 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 EMC4Q5J8M3 183 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 OR51E1Q8TCB6 317 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 ELSPBP1Q96BH3 223 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 PRRX2Q99811 253 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 MAFFQ9ULX9 164 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BKO60814 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 TTRP02766 147 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 TRGC2P03986 189 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BJP06899 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 H2BFMP0C1H6 154 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BOP23527 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BBP33778 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BDP58876 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 ERVFRD-1P60508 538 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BCP62807 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 NHLH2Q02577 135 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST2H2BEQ16778 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 BAHD1Q8TBE0 780 aaPredicted RBP10.36□□□□□ -0.75
CPSF3-202ENST00000460593 PHOSPHO2Q8TCD6 241 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BHQ93079 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BNQ99877 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HIST1H2BMQ99879 126 aa10.36□□□□□ -0.75
CPSF3-202ENST00000460593 HDHD3Q9BSH5 251 aaPredicted RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms