RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 RNF223E7ERA6 249 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 PTGES3LE9PB15 166 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 H7C1Q1 480 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 GMDSO60547 372 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 LALBAP00709 142 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 HTR1AP08908 422 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 CSF3P09919 207 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 FAHP16930 419 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 CCL1P22362 96 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 PMELP40967 661 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 GTF2A1P52655 376 aaPredicted RBP13.55□□□□□ -0.24
USP39-205ENST00000442708 DSCR9P59020 149 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 SNCBQ16143 134 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 KRT74Q7RTS7 529 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 MAPK1IP1LQ8NDC0 245 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 CSNK2A3Q8NEV1 391 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 OR14K1Q8NGZ2 314 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 MRPL48Q96GC5 212 aaKnown RBP13.55□□□□□ -0.24
USP39-205ENST00000442708 PAPOLGQ9BWT3 736 aaKnown RBP13.55□□□□□ -0.24
USP39-205ENST00000442708 EGLN1Q9GZT9 426 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 CHODLQ9H9P2 273 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 ERVK-18Q9QC07 812 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 CAB39Q9Y376 341 aaPredicted RBP13.55□□□□□ -0.24
USP39-205ENST00000442708 SIRT4Q9Y6E7 314 aaPredicted RBP13.55□□□□□ -0.24
USP39-205ENST00000442708 V9GYS6 101 aa13.55□□□□□ -0.24
USP39-205ENST00000442708 A6NIN4 97 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 DHRS3O75911 302 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 CST4P01036 141 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 CDK1P06493 297 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 ACHEP22303 614 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 TNFSF4P23510 183 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 CD200P41217 278 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 NR4A2P43354 598 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 MAP2K3P46734 347 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 CCR9P51686 369 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 CSNK2BP67870 215 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 PRDX4Q13162 271 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 ALKBH1Q13686 389 aaKnown RBP13.54□□□□□ -0.24
USP39-205ENST00000442708 MPPED2Q15777 294 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 DMRTC1Q5HYR2 192 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 PRAMEF6Q5VXH4 476 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 WDR86Q86TI4 376 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 EGFL6Q8IUX8 553 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 STX19Q8N4C7 294 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 KLHL36Q8N4N3 616 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 SEMA6DQ8NFY4 1073 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 OR10AC1Q8NH08 325 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 CCL17Q92583 94 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 REG4Q9BYZ8 158 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 BPESC1Q9GZL8 116 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 GCM1Q9NP62 436 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 PIGLQ9Y2B2 252 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 F8P00451 2351 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 MED13LQ71F56 2210 aa13.54□□□□□ -0.24
USP39-205ENST00000442708 LOC107986453A0A1B0GWG9 222 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 ZNF850A8MQ14 1090 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 NDUFS8O00217 210 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 WNT9BO14905 357 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 SMAD7O15105 426 aaKnown RBP13.53□□□□□ -0.24
USP39-205ENST00000442708 DENRO43583 198 aaKnown RBP13.53□□□□□ -0.24
USP39-205ENST00000442708 ATP6V1B1P15313 513 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 MYL12AP19105 171 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 CRHBPP24387 322 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 SLC35A2P78381 396 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 HOXA4Q00056 320 aaPredicted RBP13.53□□□□□ -0.24
USP39-205ENST00000442708 DOK3Q7L591 496 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 MOGAT3Q86VF5 341 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 KLBQ86Z14 1044 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 OR51A4Q8NGJ6 313 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 OR52N1Q8NH53 320 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 ZNF420Q8TAQ5 688 aaPredicted RBP13.53□□□□□ -0.24
USP39-205ENST00000442708 HPSE2Q8WWQ2 592 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 GATAD2BQ8WXI9 593 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 PIGCQ92535 297 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 ITPKCQ96DU7 683 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 PIMREGQ9BSJ6 248 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 SLC22A4Q9H015 551 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 DUSP21Q9H596 190 aa13.53□□□□□ -0.24
USP39-205ENST00000442708 IGHV4-61A0A0C4DH41 118 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 ZNF816-ZNF321PA0A0X1KG74 233 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 ZFPL1O95159 310 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 PTBP3O95758 552 aaKnown RBP13.52□□□□□ -0.25
USP39-205ENST00000442708 ISG15P05161 165 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 CCDC159P0C7I6 412 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 CD99P14209 185 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 SLC25A16P16260 332 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 TNFRSF1AP19438 455 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 THBS2P35442 1172 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 TGM4P49221 684 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 SRP9P49458 86 aaKnown RBP13.52□□□□□ -0.25
USP39-205ENST00000442708 GBX2P52951 348 aaPredicted RBP13.52□□□□□ -0.25
USP39-205ENST00000442708 RIPPLY1Q0D2K3 151 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 HFEQ30201 348 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 TMPRSS11AQ6ZMR5 421 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 RPS4Y2Q8TD47 263 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 OR5P3Q8WZ94 311 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 COX4I2Q96KJ9 171 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 MYCBPQ99417 103 aaPredicted RBP13.52□□□□□ -0.25
USP39-205ENST00000442708 PDCD1LG2Q9BQ51 273 aa13.52□□□□□ -0.25
USP39-205ENST00000442708 UFSP2Q9NUQ7 469 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms