RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 PRRG3Q9BZD7 231 aa6.48□□□□□ -1.37
CD44-211ENST00000442151 C1orf21Q9H246 121 aa6.48□□□□□ -1.37
CD44-211ENST00000442151 UNKLQ9H9P5 680 aaKnown RBP6.48□□□□□ -1.37
CD44-211ENST00000442151 ESM1Q9NQ30 184 aa6.48□□□□□ -1.37
CD44-211ENST00000442151 FAM96BQ9Y3D0 163 aa6.48□□□□□ -1.37
CD44-211ENST00000442151 KPTNQ9Y664 436 aa6.48□□□□□ -1.37
CD44-211ENST00000442151 COMMD3-BMI1R4GMX3 469 aa6.48□□□□□ -1.37
CD44-211ENST00000442151 A0A1W2PPH5 198 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 NKX6-3A6NJ46 265 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 AQP12BA6NM10 295 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 TIMM23O14925 209 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 ZNF205O95201 554 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 CST1P01037 141 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 KNG1P01042 644 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 ANXA8P13928 327 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 CFHR2P36980 270 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 CX3CR1P49238 355 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 CRMP1Q14194 572 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 PRAMEF6Q5VXH4 476 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 TEX36Q5VZQ5 186 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 OTPQ5XKR4 325 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 DEGS2Q6QHC5 323 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 CYP2R1Q6VVX0 501 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 Q6YL49 198 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 ZNF841Q6ZN19 808 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 ERI1Q8IV48 349 aaKnown RBP6.47□□□□□ -1.37
CD44-211ENST00000442151 AQP12AQ8IXF9 295 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 TIGD4Q8IY51 512 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 GALNT4Q8N4A0 578 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 SCCPDHQ8NBX0 429 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 CCDC197Q8NCU1 140 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 OR10G2Q8NGC3 310 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 OR9Q2Q8NGE9 314 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 OR56B2PQ8NGI1 322 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 OR6N2Q8NGY6 317 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 ZNF671Q8TAW3 534 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 SSMEM1Q8WWF3 244 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 TMIGD2Q96BF3 282 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 OTULINQ96BN8 352 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 WDFY2Q96P53 400 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 PCGF1Q9BSM1 259 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 NMNAT2Q9BZQ4 307 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 FN3KQ9H479 309 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.47□□□□□ -1.37
CD44-211ENST00000442151 PCDHGB1Q9Y5G3 927 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 TMEM14AQ9Y6G1 99 aa6.47□□□□□ -1.37
CD44-211ENST00000442151 TRAV40A0A0B4J280 105 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 A0A1B0GVI7 797 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 TNFRSF13BO14836 293 aaPredicted RBP6.46□□□□□ -1.37
CD44-211ENST00000442151 GSC2O15499 205 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 NDUFA7O95182 113 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 LHBP01229 141 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 LYNP07948 512 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 EGR1P18146 543 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 SNAI3Q3KNW1 292 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 ZNF770Q6IQ21 691 aaPredicted RBP6.46□□□□□ -1.37
CD44-211ENST00000442151 BCL6BQ8N143 479 aaPredicted RBP6.46□□□□□ -1.37
CD44-211ENST00000442151 THEM6Q8WUY1 208 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 RNF133Q8WVZ7 376 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 ASB9Q96DX5 294 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 MARCH7Q9H992 704 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 ACOXLQ9NUZ1 547 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 H2AFY2Q9P0M6 372 aaPredicted RBP6.46□□□□□ -1.37
CD44-211ENST00000442151 DNAJB11Q9UBS4 358 aa6.46□□□□□ -1.37
CD44-211ENST00000442151 SVEP1Q4LDE5 3571 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 IGHV1-69DA0A0B4J2H0 117 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 hCG_1809904A0A1W2PP81 198 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 A0A1W2PPE2 198 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 A0A1W2PR64 198 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 A0A1W2PRV1 198 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 DHRS12A0PJE2 317 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 DVL1O14640 695 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 TMPRSS2O15393 492 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 PRODHO43272 600 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 ZNF254O75437 659 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 MTRF1O75570 445 aaKnown RBP6.46□□□□□ -1.38
CD44-211ENST00000442151 FAM107AO95990 144 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 CST4P01036 141 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 IGHV1-69P01742 117 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 GYPAP02724 150 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 IGHV4-38-2P0DP08 117 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 OSMP13725 252 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 FAM3AP98173 230 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 MPPED2Q15777 294 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 OCLNQ16625 522 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 DEFB112Q30KQ8 113 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 DNAL1Q4LDG9 190 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 LCN1P1Q5VSP4 162 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 SFRP4Q6FHJ7 346 aaPredicted RBP6.46□□□□□ -1.38
CD44-211ENST00000442151 LYPD2Q6UXB3 125 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 C1orf122Q6ZSJ8 110 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 FAM57BQ71RH2 274 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 SPATC1Q76KD6 591 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 BTN2A1Q7KYR7 527 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 SLC16A9Q7RTY1 509 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 THAP5Q7Z6K1 395 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 KRT77Q7Z794 578 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 KIR3DL3Q8N743 410 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 OR1M1Q8NGA1 313 aa6.46□□□□□ -1.38
CD44-211ENST00000442151 OR51L1Q8NGJ5 315 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms