RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 GALMQ96C23 342 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 PIGMQ9H3S5 423 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 CLEC1BQ9P126 229 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 MT-CO3P00414 261 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 CISD3P0C7P0 127 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 MEOX1P50221 254 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 FUT6P51993 359 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 PDZK1IP1Q13113 114 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 SMIM21Q3B7S5 101 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 RPL7L1Q6DKI1 246 aaKnown RBP15.43■□□□□ 0.06
PTPRF-209ENST00000438120 OTOSQ8NHW6 89 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 TMEM230Q96A57 120 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 NKX6-2Q9C056 277 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-209ENST00000438120 FBXO8Q9NRD0 319 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 ZNF835Q9Y2P0 537 aa15.43■□□□□ 0.06
PTPRF-209ENST00000438120 RAB19A4D1S5 217 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 RER1O15258 196 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 CDC14BO60729 498 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 GNG10P50151 68 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 OR2T2Q6IF00 324 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 LFNGQ8NES3 379 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 GSX2Q9BZM3 304 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 CLCF1Q9UBD9 225 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 ZNF230Q9UIE0 474 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-209ENST00000438120 NCBP2LA6PVI3 153 aaKnown RBP15.42■□□□□ 0.06
PTPRF-209ENST00000438120 AKR7A2O43488 359 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 UBE3DQ7Z6J8 389 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 OR10AD1Q8NGE0 317 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 SLC39A7Q92504 469 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 AQP8O94778 261 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 RXFP4Q8TDU9 374 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 ADAT1Q9BUB4 502 aaKnown RBP15.42■□□□□ 0.06
PTPRF-209ENST00000438120 MMP25Q9NPA2 562 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 ONECUT1Q9UBC0 465 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 SUMO3P55854 103 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-209ENST00000438120 PRSS12P56730 875 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 ZXDAP98168 799 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 SKA3Q8IX90 412 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 FBXL14Q8N1E6 418 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 RCL1Q9Y2P8 373 aaKnown RBP15.42■□□□□ 0.06
PTPRF-209ENST00000438120 A0A0B4J2E0 115 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 A0A1B0GX12 115 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 ZNF727A8MUV8 499 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 NTF3P20783 257 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 BMP5P22003 454 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 ANKRD37Q7Z713 158 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 ADGRG3Q86Y34 549 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 APOBEC3DQ96AK3 386 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-209ENST00000438120 ACY3Q96HD9 319 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 TGIF2Q9GZN2 237 aa15.42■□□□□ 0.06
PTPRF-209ENST00000438120 TRPM3Q9HCF6 1732 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-209ENST00000438120 FAM90A27PA6NNH2 459 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 H7BYZ3 331 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 CHEK1O14757 476 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 ICMTO60725 284 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 ZNF787Q6DD87 383 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 ZDHHC16Q969W1 377 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 ACTR3CQ9C0K3 210 aaPredicted RBP15.41■□□□□ 0.06
PTPRF-209ENST00000438120 SLC25A32Q9H2D1 315 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 KPTNQ9Y664 436 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 AKAP11Q9UKA4 1901 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 PPP5D1E7EU14 171 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 TAAR5O14804 337 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 ASCL1P50553 236 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 SP6Q3SY56 376 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 LILRA6Q6PI73 481 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 OR52N4Q8NGI2 321 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 IGHV1OR21-1A0A087WYE8 117 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 E5RGE8 158 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 FZD5Q13467 585 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 LYG2Q86SG7 212 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 EXTL1Q92935 676 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 GNPNAT1Q96EK6 184 aaPredicted RBP15.41■□□□□ 0.06
PTPRF-209ENST00000438120 NSG2Q9Y328 171 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 NUP205Q92621 2012 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 TEX51A0A1B0GUA7 166 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 LINC00303Q3SY05 128 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 RPUSD3Q6P087 351 aaKnown RBP15.41■□□□□ 0.06
PTPRF-209ENST00000438120 ZNF629Q9UEG4 869 aaPredicted RBP15.41■□□□□ 0.06
PTPRF-209ENST00000438120 TTC3P53804 2025 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 A0A1B0GTH9 108 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 TOX4O94842 621 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 PDGFBP01127 241 aaPredicted RBP15.41■□□□□ 0.06
PTPRF-209ENST00000438120 TAS2R45P59539 299 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 TMPRSS13Q9BYE2 586 aa15.41■□□□□ 0.06
PTPRF-209ENST00000438120 CA6P23280 308 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 TPBGQ13641 420 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 ACOT6Q3I5F7 207 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-209ENST00000438120 CMBLQ96DG6 245 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 OR8B4Q96RC9 309 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 ZNF71Q9NQZ8 489 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-209ENST00000438120 CD1EP15812 388 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 STUMQ69YW2 141 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 CADM4Q8NFZ8 388 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 BTF3L4Q96K17 158 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 TRGV10A0A0A0MS01 117 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 PATE4P0C8F1 98 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 SPNP16150 400 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 CLDN20P56880 219 aa15.4■□□□□ 0.06
PTPRF-209ENST00000438120 PPP1R1CQ8WVI7 109 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms