RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 OR8B2Q96RD0 313 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 MDFIQ99750 246 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 TMPRSS13Q9BYE2 586 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 PBOV1Q9GZY1 135 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 C7orf69Q9H7B7 122 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 METTL17Q9H7H0 456 aaPredicted RBP12.73□□□□□ -0.37
LIMS3-201ENST00000437679 RHBDD3Q9Y3P4 386 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 MPC1Q9Y5U8 109 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 A0A0U1RQV5 110 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 A8MXK9 166 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 PRR32B1ATL7 298 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 LGALS8O00214 317 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 ATP6V1E1P36543 226 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 MAP2K3P46734 347 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 GNB2P62879 340 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 EGR3Q06889 387 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 TMED1Q13445 227 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 ZIK1Q3SY52 487 aaPredicted RBP12.72□□□□□ -0.37
LIMS3-201ENST00000437679 DCDC5Q6ZRR9 648 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 RFLNBQ8N5W9 214 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 PIGCQ92535 297 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 ITFG2Q969R8 447 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 EME1Q96AY2 570 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 APOL4Q9BPW4 351 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 C9orf16Q9BUW7 83 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 SSBP3Q9BWW4 388 aaPredicted RBP12.72□□□□□ -0.37
LIMS3-201ENST00000437679 TRIM36Q9NQ86 728 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 OR5V1Q9UGF6 321 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 GTF2A1LQ9UNN4 478 aa12.72□□□□□ -0.37
LIMS3-201ENST00000437679 POLR3KQ9Y2Y1 108 aaPredicted RBP12.72□□□□□ -0.37
LIMS3-201ENST00000437679 LOC105371242A0A075B767 164 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 TRAV38-1A0A0B4J264 116 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF850A8MQ14 1090 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 RNF212BA8MTL3 300 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 LOC110117498-PIK3R3F6TDL0 507 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 CST4P01036 141 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 AVPP01185 164 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 OR2T7P0C7T2 308 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 ATP6V1B1P15313 513 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 ACKR3P25106 362 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 PRDX4Q13162 271 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 SFRP4Q6FHJ7 346 aaPredicted RBP12.71□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF826PQ6ZT77 177 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 PQLC1Q8N2U9 271 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 GALNT4Q8N4A0 578 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 C19orf18Q8NEA5 215 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 OR1M1Q8NGA1 313 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 OR2T27Q8NH04 317 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 NANPQ8TBE9 248 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 TMEM158Q8WZ71 300 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 HRASLS5Q96KN8 279 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 HIST1H2AAQ96QV6 131 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 TBX5Q99593 518 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 RTL8AQ9BWD3 113 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 MOB1AQ9H8S9 216 aa12.71□□□□□ -0.37
LIMS3-201ENST00000437679 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.71□□□□□ -0.37
LIMS3-201ENST00000437679 NUFIP1Q9UHK0 495 aaKnown RBP12.71□□□□□ -0.37
LIMS3-201ENST00000437679 OOEPA6NGQ2 149 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 C3orf80F5H4A9 247 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 TRAPPC2LH3BP13 241 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 MAGEB4O15481 346 aaPredicted RBP12.7□□□□□ -0.38
LIMS3-201ENST00000437679 BAG2O95816 211 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 KRT8P05787 483 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 CD80P33681 288 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 PITPNBP48739 271 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 ZNF154Q13106 437 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 BCL2L15Q5TBC7 163 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 LIPNQ5VXI9 398 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 C1orf229Q6ZS94 237 aaPredicted RBP12.7□□□□□ -0.38
LIMS3-201ENST00000437679 ZBTB49Q6ZSB9 765 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 KCTD8Q6ZWB6 473 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 C1QL2Q7Z5L3 287 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 THAP5Q7Z6K1 395 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 ZDHHC23Q8IYP9 409 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 YIPF7Q8N8F6 280 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 SEMA6DQ8NFY4 1073 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 OR10H4Q8NGA5 316 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 OR51E1Q8TCB6 317 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 STMN2Q93045 179 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 ITPKCQ96DU7 683 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 FAM71F1Q96KD3 344 aaPredicted RBP12.7□□□□□ -0.38
LIMS3-201ENST00000437679 MRI1Q9BV20 369 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 OCEL1Q9H607 264 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 PPP1R3EQ9H7J1 279 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 RNPEPL1Q9HAU8 725 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 GPR84Q9NQS5 396 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 MMP26Q9NRE1 261 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 CLN8Q9UBY8 286 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 MRM2Q9UI43 246 aaKnown RBP12.7□□□□□ -0.38
LIMS3-201ENST00000437679 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.7□□□□□ -0.38
LIMS3-201ENST00000437679 INSIG2Q9Y5U4 225 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 R4GMQ9 66 aa12.7□□□□□ -0.38
LIMS3-201ENST00000437679 ZNF816-ZNF321PA0A0X1KG74 233 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 A0A1W2PQL4 384 aaPredicted RBP12.69□□□□□ -0.38
LIMS3-201ENST00000437679 TMEM210A6NLX4 147 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 SNTNA6NMZ2 147 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 NDUFA2O43678 99 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 TCF21O43680 179 aa12.69□□□□□ -0.38
LIMS3-201ENST00000437679 MTRF1O75570 445 aaKnown RBP12.69□□□□□ -0.38
LIMS3-201ENST00000437679 APOL3O95236 402 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms