RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 VDAC1P21796 283 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 ZNF648Q5T619 568 aaPredicted RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 AKR1E2Q96JD6 320 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 CHST8Q9H2A9 424 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 H3BMH7 237 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 FCN1O00602 326 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 TM4SF1P30408 202 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 LCN2P80188 198 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 OR2V2Q96R30 315 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 OR5M11Q96RB7 305 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 LAT2Q9GZY6 243 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 A0A1B0GV50 99 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 OR13C7P0DN81 318 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 ALOX5APP20292 161 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 DHRS2Q13268 280 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 ALKBH2Q6NS38 261 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 GPR32P1Q8NGA4 272 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 MRGPRX3Q96LB0 322 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 C16orf70Q9BSU1 422 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 CHST11Q9NPF2 352 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 MTCL1Q9Y4B5 1905 aaKnown RBP6.53□□□□□ -1.36
VPS53-204ENST00000437048 JMJD7P0C870 316 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 SHC1P29353 583 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 LMAN2Q12907 356 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 MCHR2Q969V1 340 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 SLC52A3Q9NQ40 469 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 COL6A6A6NMZ7 2263 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 H3BNC9 293 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 HBZP02008 142 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 DPTQ07507 201 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 CCDC74AQ96AQ1 378 aa6.53□□□□□ -1.36
VPS53-204ENST00000437048 A0A0D9SEW6 157 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 ZNF816-ZNF321PA0A0X1KG74 233 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 TMEM262E9PQX1 116 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CD46P15529 392 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 HHEXQ03014 270 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 LEMD1Q68G75 181 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 RTP3Q9BQQ7 232 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 TMEM147Q9BVK8 224 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 ZGRF1Q86YA3 2104 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 ABCA3Q99758 1704 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 A0A1B0GW15 77 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 M0QYG6 137 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 NXPH2O95156 264 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 VASPP50552 380 aaPredicted RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 NHLH1Q02575 133 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 JOSD1Q15040 202 aaPredicted RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 AMIGO3Q86WK7 504 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 ASB5Q8WWX0 329 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 AUNIPQ9H7T9 357 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 MED13LQ71F56 2210 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 FBLL1A6NHQ2 334 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 HIST1H1CP16403 213 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 GAB1Q13480 694 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 HMGB4Q8WW32 186 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 IKZF5Q9H5V7 419 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 APOBEC3BQ9UH17 382 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 IGLV3-10A0A075B6K4 115 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 RPS4Y1P22090 263 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 PPOXP50336 477 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 BEX5Q5H9J7 111 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 MRPL24Q96A35 216 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 GHITMQ9H3K2 345 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 ROBO1Q9Y6N7 1651 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CLEC18AA5D8T8 446 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 POU3F2P20265 443 aaPredicted RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 DDTP30046 118 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 PXNP49023 591 aaPredicted RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 ANKRD55Q3KP44 614 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 MARCH8Q5T0T0 291 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CLEC18CQ8NCF0 446 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 SEBOXQ9HB31 216 aaPredicted RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 LOC107986453A0A1B0GWG9 222 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CCL16O15467 120 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CA3P07451 260 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 ATXN1LP0C7T5 689 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 FAM87AP0C7U9 286 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 MRPS21P82921 87 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 DSC1Q08554 894 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 LY6G5CQ5SRR4 150 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 RPS4Y2Q8TD47 263 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 FAM173AQ9BQD7 235 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 WASHC3Q9Y3C0 194 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 NQO2P16083 231 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 USP54Q70EL1 1684 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 A0A1B0GWA3 101 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CDKN2AP42771 156 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 Q1RN00 199 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CYHR1Q6ZMK1 362 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 STAC2Q6ZMT1 411 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 C2CD4CQ8TF44 421 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 OPN4Q9UHM6 478 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 NME2P1O60361 137 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 FLT3LGP49771 235 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 SUCLG1P53597 346 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 CD226Q15762 336 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 C1orf220Q5T0J3 134 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 C1orf140Q5VVS0 124 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 NKAIN2Q5VXU1 208 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CALHM3Q86XJ0 350 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms