RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SAMHD1Q9Y3Z3 626 aaKnown RBP9.54□□□□□ -0.88
USP4-204ENST00000416417 DOCK11Q5JSL3 2073 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 hCG_38984A0A1B0GV85 526 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 CDIPTO14735 213 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 LIPFP07098 398 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 MAGEA2P43356 314 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 GSK3AP49840 483 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 MS4A2Q01362 244 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 PDCD1Q15116 288 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 MICAQ29983 383 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 DMRTC1Q5HYR2 192 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 TEX30Q5JUR7 227 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 HIST2H2BDQ6DRA6 164 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 WDR82Q6UXN9 313 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 RHOUQ7L0Q8 258 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 PRSS45Q7RTY3 260 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 SPERTQ8NA61 448 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 RPL3LQ92901 407 aaKnown RBP9.53□□□□□ -0.88
USP4-204ENST00000416417 INTS14Q96SY0 518 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 PAPOLGQ9BWT3 736 aaKnown RBP9.53□□□□□ -0.88
USP4-204ENST00000416417 WDR13Q9H1Z4 485 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 OR51V1Q9H2C8 321 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 CNTD2Q9H8S5 307 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 ACTR3BQ9P1U1 418 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 ARL2BPQ9Y2Y0 163 aa9.53□□□□□ -0.88
USP4-204ENST00000416417 VWFP04275 2813 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 CLPSL1A2RUU4 121 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 RIIAD1A6NNX1 92 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 B2RBV5 119 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 NDUFA2O43678 99 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 SELENOFO60613 162 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 NDUFA7O95182 113 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 ACKR3P25106 362 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 GSTT1P30711 240 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 IER3P46695 156 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 BPIFB3P59826 476 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 GRB2P62993 217 aaKnown RBP9.52□□□□□ -0.88
USP4-204ENST00000416417 MICBQ29980 383 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 OR2T5Q6IEZ7 315 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 OR10G2Q8NGC3 310 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 OR2T29Q8NH02 315 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 LINC01006Q8NI28 216 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 TBC1D15Q8TC07 691 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 SSMEM1Q8WWF3 244 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 H1FXQ92522 213 aaKnown RBP9.52□□□□□ -0.88
USP4-204ENST00000416417 PGAM5Q96HS1 289 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 REEP1Q9H902 201 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 TRIM36Q9NQ86 728 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 KLHDC2Q9Y2U9 406 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 RNF114Q9Y508 228 aa9.52□□□□□ -0.88
USP4-204ENST00000416417 ZNF850A8MQ14 1090 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 IFNGP01579 166 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 H2BFMP0C1H6 154 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 POU1F1P28069 291 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 DDOSTP39656 456 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 OPRL1P41146 370 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 SLC15A1P46059 708 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 HCCSP53701 268 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 TAF9Q16594 264 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 CDONQ4KMG0 1287 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 KCTD8Q6ZWB6 473 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 PIGWQ7Z7B1 504 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 TMEM179BQ7Z7N9 219 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 TMEM86BQ8N661 226 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 Q8N7P7 452 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 LY6G5BQ8NDX9 201 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 THEM6Q8WUY1 208 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 RNF133Q8WVZ7 376 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 CLPTM1LQ96KA5 538 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 LYZL4Q96KX0 146 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 FEVQ99581 238 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 CITED1Q99966 193 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 DGCR6LQ9BY27 220 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 OPA3Q9H6K4 179 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 RNPEPL1Q9HAU8 725 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 ELL3Q9HB65 397 aaPredicted RBP9.51□□□□□ -0.89
USP4-204ENST00000416417 CMC2Q9NRP2 79 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 KAAG1Q9UBP8 84 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 ZNF391Q9UJN7 358 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 BAIAP2Q9UQB8 552 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 POMT1Q9Y6A1 747 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 RNASEK-C17orf49H0YIS7 233 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 H3BN98 237 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 AKR7A2O43488 359 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 NDUFB3O43676 98 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 ECDO95905 644 aaPredicted RBP9.51□□□□□ -0.89
USP4-204ENST00000416417 MUC1P15941 1255 aaPredicted RBP9.51□□□□□ -0.89
USP4-204ENST00000416417 ZNF3P17036 446 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 GRK5P34947 590 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 GNALP38405 381 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 NAA10P41227 235 aaPredicted RBP9.51□□□□□ -0.89
USP4-204ENST00000416417 MZT1Q08AG7 82 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 PRDX4Q13162 271 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 ASPHD2Q6ICH7 369 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 PLBD1Q6P4A8 553 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 Q6ZSV7 163 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 DHFR2Q86XF0 187 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 TIGD4Q8IY51 512 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 HS3ST5Q8IZT8 346 aa9.51□□□□□ -0.89
USP4-204ENST00000416417 BBS1Q8NFJ9 593 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms