RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 CRHBPP24387 322 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 AKR1C1Q04828 323 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 SYT14P1Q58G82 188 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 FAM209BQ5JX69 171 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 STEAP1BQ6NZ63 245 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 REC114Q7Z4M0 266 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 LILRB1Q8NHL6 650 aaPredicted RBP6.56□□□□□ -1.36
SCN9A-202ENST00000409435 NUBPLQ8TB37 319 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 RASL10BQ96S79 203 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 CHRDL1Q9BU40 450 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 RAB33BQ9H082 229 aa6.56□□□□□ -1.36
SCN9A-202ENST00000409435 SBF1O95248 1867 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 SIPA1L3O60292 1781 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 TUBGCP6Q96RT7 1819 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR2F2O95006 317 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 F13BP05160 661 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 H2AFB1P0C5Y9 115 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ABCD3P28288 659 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 EMP1P54849 157 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 DSCR9P59020 149 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 FOXF1Q12946 379 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR2F1Q13607 317 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 GGTA1PQ4G0N0 100 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 LETMD1Q6P1Q0 360 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 FBXW12Q6X9E4 464 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 TM4SF19Q96DZ7 209 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 GALNT9Q9HCQ5 603 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 SLC52A3Q9NQ40 469 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 RIMS3Q9UJD0 308 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 C19orf53Q9UNZ5 99 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ZNFX1Q9P2E3 1918 aaKnown RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 TGFAP01135 160 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 CEACAM3P40198 252 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 GZMKP49863 264 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 RAC1P63000 192 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 MICBQ29980 383 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 MAJINQ3KP22 176 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 TRMT12Q53H54 448 aaKnown RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 TMEM88Q6PEY1 159 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF793Q6ZN11 406 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF534Q76KX8 674 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 MUC20Q8N307 709 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF738Q8NE65 137 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR1S2Q8NGQ3 325 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR2G2Q8NGZ5 317 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR4K15Q8NH41 348 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 RNASE6Q93091 150 aaKnown RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ANKRD9Q96BM1 317 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 KCTD12Q96CX2 325 aaKnown RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 L3HYPDHQ96EM0 354 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ST6GALNAC5Q9BVH7 336 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 FZR1Q9UM11 496 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR2W5A6NFC9 320 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 RAB29O14966 203 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ACSM4P0C7M7 580 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 HLA-DMAP28067 261 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 CD80P33681 288 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR10A3P58181 314 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 FZD5Q13467 585 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ST6GALNAC3Q8NDV1 305 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR56B1Q8NGI3 324 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OR6F1Q8NGZ6 308 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 WNT2BQ93097 391 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 DUS3LQ96G46 650 aaKnown RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 IGSF5Q9NSI5 407 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ZCWPW2A0A1B0GU75 182 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 CDHR4A6H8M9 788 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 B4DXG7 233 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 M0R3H8 397 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 SIAH2O43255 324 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 GIPP09681 153 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 GABRB3P28472 473 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 F2RL1P55085 397 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 GNB1P62873 340 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 RAB32Q13637 225 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 MFSD12Q6NUT3 480 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 CELF2-AS1Q8N7Q2 184 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 FAM222BQ8WU58 562 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 SFT2D1Q8WV19 159 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 LIPHQ8WWY8 451 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 IL1F10Q8WWZ1 152 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 TVP23CQ96ET8 276 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 RSG1Q9BU20 258 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 MRPL13Q9BYD1 178 aaKnown RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 OPN3Q9H1Y3 402 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 GIMAP2Q9UG22 337 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 SOX21Q9Y651 276 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-202ENST00000409435 CACNA1BQ00975 2339 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 TTC3P53804 2025 aa6.55□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF727A8MUV8 499 aa6.54□□□□□ -1.36
SCN9A-202ENST00000409435 FUCA1P04066 466 aa6.54□□□□□ -1.36
SCN9A-202ENST00000409435 ALPLP05186 524 aa6.54□□□□□ -1.36
SCN9A-202ENST00000409435 LIPAP38571 399 aa6.54□□□□□ -1.36
SCN9A-202ENST00000409435 B2MP61769 119 aa6.54□□□□□ -1.36
SCN9A-202ENST00000409435 CDK5R2Q13319 367 aa6.54□□□□□ -1.36
SCN9A-202ENST00000409435 LEMD1Q68G75 181 aa6.54□□□□□ -1.36
SCN9A-202ENST00000409435 PLD6Q8N2A8 252 aaKnown RBP6.54□□□□□ -1.36
SCN9A-202ENST00000409435 NECAP1Q8NC96 275 aa6.54□□□□□ -1.36
SCN9A-202ENST00000409435 RBM14Q96PK6 669 aaKnown RBP6.54□□□□□ -1.36
SCN9A-202ENST00000409435 ACPTQ9BZG2 426 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms