RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CCNL2Q96S94 520 aaPredicted RBP18.54■□□□□ 0.56
CTCF-202ENST00000401394 TAF9BQ9HBM6 251 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 CDC14BO60729 498 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 SFT2D2O95562 160 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 GRINAQ7Z429 371 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 SEC11CQ9BY50 192 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 COL4A2P08572 1712 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 SHANK1Q9Y566 2161 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 IGKV1-9A0A0C4DH69 117 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 HSPB2A8KAH6 182 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 NME2P1O60361 137 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 SNRNP70P08621 437 aaKnown RBP18.53■□□□□ 0.56
CTCF-202ENST00000401394 AMY2BP19961 511 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 RAB6AP20340 208 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 HSPB2Q16082 182 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 OR8B12Q8NGG6 310 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 NMES1Q9C002 83 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 RPS10P5Q9NQ39 176 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 EHFQ9NZC4 300 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 LHFPL6Q9Y693 200 aa18.53■□□□□ 0.56
CTCF-202ENST00000401394 TRBV6-7A0A0A0MS04 114 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 hCG_1809904A0A1W2PP81 198 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 A0A1W2PR64 198 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 A0A1W2PRV1 198 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 A6NLC8 198 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 ZNF20P17024 532 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 HSD11B1P28845 292 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 ACY1Q03154 408 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 HYAL1Q12794 435 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 FOXF1Q12946 379 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 NKAIN3Q8N8D7 197 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 OR5D14Q8NGL3 314 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 ERGIC1Q969X5 290 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 SULT4A1Q9BR01 284 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 CD207Q9UJ71 328 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 IGKV3D-11A0A0A0MRZ8 115 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 OR5K4A6NMS3 321 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 SGCEO43556 437 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 ARG1P05089 322 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 ZNF806P0C7X5 589 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 HIST1H1DP16402 221 aaKnown RBP18.52■□□□□ 0.56
CTCF-202ENST00000401394 EN2P19622 333 aaPredicted RBP18.52■□□□□ 0.56
CTCF-202ENST00000401394 MMP16P51512 607 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 ZNF121P58317 390 aaPredicted RBP18.52■□□□□ 0.56
CTCF-202ENST00000401394 TSPO2Q5TGU0 170 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 KLHL24Q6TFL4 600 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 Q6ZRG5 221 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 FAM57BQ71RH2 274 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 OR10H5Q8NGA6 315 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 OR1L3Q8NH93 324 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 ADAMTS17Q8TE56 1095 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 REEP6Q96HR9 211 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 VN1R1Q9GZP7 353 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 SLC26A1Q9H2B4 701 aa18.52■□□□□ 0.56
CTCF-202ENST00000401394 ELL3Q9HB65 397 aaPredicted RBP18.52■□□□□ 0.56
CTCF-202ENST00000401394 LSM5Q9Y4Y9 91 aaKnown RBP18.52■□□□□ 0.56
CTCF-202ENST00000401394 TRAV20A0A0B4J274 112 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 NUDT21O43809 227 aaKnown RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 ZNF44P15621 663 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 NOVA1P51513 510 aaKnown RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 CAV2P51636 162 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 OR1D5P58170 312 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 CSNK2A1P68400 391 aaPredicted RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 PRSS54Q6PEW0 395 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 CSNK2A3Q8NEV1 391 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 MTIF3Q9H2K0 278 aaKnown RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 ZNF701Q9NV72 531 aaPredicted RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 RPH3AQ9Y2J0 694 aaPredicted RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 RCL1Q9Y2P8 373 aaKnown RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 BPNT1O95861 308 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 NAT2P11245 290 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 FOLR1P15328 257 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 SERPINA2P20848 420 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 SNU13P55769 128 aaKnown RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 HGFACQ04756 655 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 DYRK2Q92630 601 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 TMEM59Q9BXS4 323 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 PRSS44E7EML9 344 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 CSTBP04080 98 aaKnown RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 HKR1P10072 659 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 RPS2P15880 293 aaKnown RBP18.51■□□□□ 0.55
CTCF-202ENST00000401394 PTGER4P35408 488 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 IGSF11Q5DX21 431 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 KRBOX4Q5JUW0 171 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 BATF2Q8N1L9 274 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 OR5H2Q8NGV7 314 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 THRSPQ92748 146 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 KLHDC7BQ96G42 594 aa18.51■□□□□ 0.55
CTCF-202ENST00000401394 A0A0A6YYH2 397 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 A6NJ64 397 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 RRADP55042 308 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 HS3ST3A1Q9Y663 406 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 XRCC2O43543 280 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 ZNF708P17019 499 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 CX3CR1P49238 355 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 OR2B8PP59922 312 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 C6orf201Q7Z4U5 140 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 C20orf196Q8IYI0 205 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 OR51T1Q8NGJ9 327 aa18.5■□□□□ 0.55
CTCF-202ENST00000401394 RALGAPA1Q6GYQ0 2036 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms