RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 OR9A4Q8NGU2 314 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 OR51E1Q8TCB6 317 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 RTN4IP1Q8WWV3 396 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-201ENST00000399429 WFIKKN1Q96NZ8 548 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 OR8B4Q96RC9 309 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 PRSS27Q9BQR3 290 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 CNTD2Q9H8S5 307 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 MSL2Q9HCI7 577 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 HCFC1R1Q9NWW0 138 aa8.35□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF320A2RRD8 509 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF264O43296 627 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 TBX6O95947 436 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 AGAP20933 346 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 FPR2P25090 351 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 KRTDAPP60985 99 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 MRPL58Q14197 206 aaKnown RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF787Q6DD87 383 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF574Q6ZN55 896 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF765Q7L2R6 523 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 OR10A7Q8NGE5 316 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 OTOSQ8NHW6 89 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 TSLPQ969D9 159 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ALG14Q96F25 216 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF845Q96IR2 970 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 WDR92Q96MX6 357 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 IGFLR1Q9H665 355 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 DAPP1Q9UN19 280 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 KLHDC2Q9Y2U9 406 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 TRIP12Q14669 1992 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 A0A087WV48 116 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 CD79AP11912 226 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 PPP1CCP36873 323 aaKnown RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 PAX5Q02548 391 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ACKR1Q16570 336 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 C2orf27AQ580R0 203 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 TMEM268Q5VZI3 342 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 UBE3DQ7Z6J8 389 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 OR10C1Q96KK4 312 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 SGCZQ96LD1 299 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 C19orf43Q9BQ61 176 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 VN1R1Q9GZP7 353 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ADAM19Q9H013 955 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 SCN2AQ99250 2005 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 FAM24AA6NFZ4 105 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 HTD2P86397 168 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 PLCXD2Q0VAA5 305 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 METRNLQ641Q3 311 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 OR52N4Q8NGI2 321 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 FAM174AQ8TBP5 190 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 GNPNAT1Q96EK6 184 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ARHGAP5-AS1Q96IT6 56 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 WWTR1Q9GZV5 400 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 OR51I2Q9H344 312 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 FLRT3Q9NZU0 649 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 OSGIN2Q9Y236 505 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 STRCQ7RTU9 1775 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 LTBP3Q9NS15 1303 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 OTOFQ9HC10 1997 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 C4orf47A7E2U8 309 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 H0YGG7 62 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ARPC3O15145 178 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF205O95201 554 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 OR5H8P0DN80 308 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 SFTPCP11686 197 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 IL2RGP31785 369 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 RPS11P62280 158 aaKnown RBP eCLIP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 SLC7A9P82251 487 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 Q7L0L9 218 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 FAM160A2Q8N612 972 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 EDARADDQ8WWZ3 215 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 PIGTQ969N2 578 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 TSACCQ96A04 125 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 STACQ99469 402 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 CHST5Q9GZS9 411 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 CHRNA9Q9UGM1 479 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 SUSD2Q9UGT4 822 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 RNF24Q9Y225 148 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 FUT9Q9Y231 359 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 VDAC3Q9Y277 283 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 TMEM184BQ9Y519 407 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 LRP12Q9Y561 859 aa8.34□□□□□ -1.07
COL28A1-201ENST00000399429 MRPS18BQ9Y676 258 aaKnown RBP8.34□□□□□ -1.07
COL28A1-201ENST00000399429 KNTC1P50748 2209 aa8.34□□□□□ -1.08
COL28A1-201ENST00000399429 ARID2Q68CP9 1835 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 FGF16O43320 207 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 FOLR2P14207 255 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 IL9P15248 144 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 OR3A1P47881 315 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 LBX1P52954 281 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 MED25Q71SY5 747 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 C11orf42Q8N5U0 333 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 KCNS2Q9ULS6 477 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 A0A1W2PQ45 241 aaPredicted RBP8.33□□□□□ -1.08
COL28A1-201ENST00000399429 A0A1W2PQY0 241 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 M0QZK8 103 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 HMGB3O15347 200 aaKnown RBP8.33□□□□□ -1.08
COL28A1-201ENST00000399429 LILRB3O75022 631 aa8.33□□□□□ -1.08
COL28A1-201ENST00000399429 GGCTO75223 188 aaKnown RBP8.33□□□□□ -1.08
COL28A1-201ENST00000399429 MBPP02686 304 aaPredicted RBP8.33□□□□□ -1.08
COL28A1-201ENST00000399429 METTL15P1P0C7V9 234 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms