RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ABCB9Q9NP78 766 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 GNG8Q9UK08 70 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 FAM20BO75063 409 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 IGHV2-70P01814 119 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 IGHA1P01876 353 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 LMO4P61968 165 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 BTG1P62324 171 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 ACTA2P62736 377 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 ACTG2P63267 376 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 TP53I3Q53FA7 332 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 KLHL22Q53GT1 634 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 CATSPERDQ86XM0 798 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 C1orf87Q8N0U7 546 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 ITPKCQ96DU7 683 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 MRPL48Q96GC5 212 aaKnown RBP18.29■□□□□ 0.52
CLN3-207ENST00000395653 FN3KRPQ9HA64 309 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 INPP5EQ9NRR6 644 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 ACOXLQ9NUZ1 547 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 MYRFQ9Y2G1 1151 aa18.29■□□□□ 0.52
CLN3-207ENST00000395653 LOC100289279A0A1B0GTE1 492 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 ISPDA4D126 451 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 ANXA2P2A6NMY6 339 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 MTRF1O75570 445 aaKnown RBP18.28■□□□□ 0.52
CLN3-207ENST00000395653 DHRS3O75911 302 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 PMELP40967 661 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 CDH15P55291 814 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 MPPED2Q15777 294 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 SMN1Q16637 294 aaKnown RBP18.28■□□□□ 0.52
CLN3-207ENST00000395653 ZBTB37Q5TC79 503 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 EGFL6Q8IUX8 553 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 LINC01356Q8N9X3 169 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 SEMA6DQ8NFY4 1073 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 OR11L1Q8NGX0 322 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 CNIH3Q8TBE1 160 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 NRG4Q8WWG1 115 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 RAB39BQ96DA2 213 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 FAM71F1Q96KD3 344 aaPredicted RBP18.28■□□□□ 0.52
CLN3-207ENST00000395653 GAL3ST1Q99999 423 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 ZNF665Q9H7R5 613 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 YAE1D1Q9NRH1 226 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 ABCA2Q9BZC7 2435 aa18.28■□□□□ 0.52
CLN3-207ENST00000395653 NIPBLQ6KC79 2804 aaeCLIP18.27■□□□□ 0.52
CLN3-207ENST00000395653 ZNF816-ZNF321PA0A0X1KG74 233 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 A8MV72 311 aaPredicted RBP18.27■□□□□ 0.52
CLN3-207ENST00000395653 H0YJX3 145 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 FSTL3O95633 263 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 CYB5R3P00387 301 aaPredicted RBP18.27■□□□□ 0.52
CLN3-207ENST00000395653 IRF2P14316 349 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 RBMXP38159 391 aaKnown RBP18.27■□□□□ 0.52
CLN3-207ENST00000395653 RIPPLY1Q0D2K3 151 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 PRDX4Q13162 271 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 GALEQ14376 348 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 TMEM155Q4W5P6 130 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 Q6ZSR3 168 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 LRRC28Q86X40 367 aaPredicted RBP18.27■□□□□ 0.52
CLN3-207ENST00000395653 OR52I1Q8NGK6 324 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 FGF20Q9NP95 211 aaPredicted RBP18.27■□□□□ 0.52
CLN3-207ENST00000395653 UFSP2Q9NUQ7 469 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 SLC22A13Q9Y226 551 aa18.27■□□□□ 0.52
CLN3-207ENST00000395653 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.27■□□□□ 0.517e-9■■□□□ 13.5
CLN3-207ENST00000395653 ZFHX3Q15911 3703 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 A0A1B0GTI1 187 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 ZNF850A8MQ14 1090 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 B4DSR2 109 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 IGHV2-5P01817 119 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 CCL1P22362 96 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 MDH2P40926 338 aaKnown RBP18.26■□□□□ 0.51
CLN3-207ENST00000395653 ZMYND11Q15326 602 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 FAM166AQ6J272 317 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 THAP5Q7Z6K1 395 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 ZDHHC23Q8IYP9 409 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 C8orf59Q8N0T1 100 aaPredicted RBP18.26■□□□□ 0.51
CLN3-207ENST00000395653 SPICQ8N5J4 248 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 PIGCQ92535 297 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 TFAP2CQ92754 450 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 MICU1Q9BPX6 476 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 ALG8Q9BVK2 526 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 JAM3Q9BX67 310 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 PPP1R3EQ9H7J1 279 aa18.26■□□□□ 0.51
CLN3-207ENST00000395653 FN1P02751 2386 aaKnown RBP18.26■□□□□ 0.51
CLN3-207ENST00000395653 IRGMA1A4Y4 181 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 DHRS7CA6NNS2 312 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 INAFM1C9JVW0 142 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 P2RY10O00398 339 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 TGFAP01135 160 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 GRPP07492 148 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 GNAO1P09471 354 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 OR12D2P58182 307 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 WDR38Q5JTN6 314 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 DOK3Q7L591 496 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 WDR86Q86TI4 376 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 LHFPL3Q86UP9 236 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 SYS1Q8N2H4 156 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 MUC20Q8N307 709 aaPredicted RBP18.25■□□□□ 0.51
CLN3-207ENST00000395653 PRSS35Q8N3Z0 413 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 OR5P3Q8WZ94 311 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 RNF166Q96A37 237 aaPredicted RBP18.25■□□□□ 0.51
CLN3-207ENST00000395653 ZNF649Q9BS31 505 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 RTL8AQ9BWD3 113 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 ERVK13-1Q9NX77 482 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms