RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TMEM14DPA8MWL7 114 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 TPPPO94811 219 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 CGAP01215 116 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 TPOP07202 933 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 COX5AP20674 150 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 RIPPLY1Q0D2K3 151 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 KISS1Q15726 138 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 HACD4Q5VWC8 232 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 TMEM42Q69YG0 159 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 AWAT2Q6E213 333 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 MYPOPQ86VE0 399 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-202ENST00000372405 NAXEQ8NCW5 288 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 DUSP18Q8NEJ0 188 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 FAM46BQ96A09 425 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 STARD4Q96DR4 205 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 PLSCR4Q9NRQ2 329 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 GPR173Q9NS66 373 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 FBLN5Q9UBX5 448 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 ZNF391Q9UJN7 358 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 CACNG2Q9Y698 323 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 A0A1W2PR80 420 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 XRCC2O43543 280 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 CNOT4O95628 575 aaKnown RBP11.93□□□□□ -0.5
PTPRF-202ENST00000372405 NGFP01138 241 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 RAB6AP20340 208 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 SLC6A1P30531 599 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 WNT5AP41221 380 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 TDGF1P3P51864 188 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 TMPRSS3P57727 454 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 GABRA6Q16445 453 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 MZT2BQ6NZ67 158 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 FAM180AQ6UWF9 173 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 GLIPR1L1Q6UWM5 242 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 C1QL2Q7Z5L3 287 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 DPPA2Q7Z7J5 298 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 CD163Q86VB7 1156 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 ZNF101Q8IZC7 436 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 GABRG1Q8N1C3 465 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 TOMM5Q8N4H5 51 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 TMEM104Q8NE00 496 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 OR5D18Q8NGL1 313 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 ENKURQ8TC29 256 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 PIGTQ969N2 578 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 ITFG2Q969R8 447 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 ITPKCQ96DU7 683 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 DIABLOQ9NR28 239 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 NLKQ9UBE8 527 aa11.93□□□□□ -0.5
PTPRF-202ENST00000372405 MRPS28Q9Y2Q9 187 aaKnown RBP11.93□□□□□ -0.5
PTPRF-202ENST00000372405 A0A0B4J293 547 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 A0A1W2PP11 408 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 GMDSO60547 372 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 CELA3BP08861 270 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 FAM87AP0C7U9 286 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 CD300CQ08708 224 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 GK2Q14410 553 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 CARTPTQ16568 116 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 KRTCAP3Q53RY4 240 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 UBASH3BQ8TF42 649 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 FCAMRQ8WWV6 532 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 UPRTQ96BW1 309 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 REPIN1Q9BWE0 567 aaKnown RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 POFUT1Q9H488 388 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 MRPL15Q9P015 296 aaKnown RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 RAB22AQ9UL26 194 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 RP1L1Q8IWN7 2480 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 ZGRF1Q86YA3 2104 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 NCOR2Q9Y618 2525 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 IGKV1-27A0A075B6S5 117 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 FAM240BA0A1B0GVZ2 78 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 RAB27BO00194 218 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 SERPINA5P05154 406 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 ZNF14P17017 642 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 CAPZA1P52907 286 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 MRPS10P82664 201 aaKnown RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 GUCA2AQ02747 115 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 TGFBR3Q03167 851 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 PLP2Q04941 152 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 PLA1AQ53H76 456 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 TMEM255AQ5JRV8 349 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 C3P1Q6ZMU1 363 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 RTN4RL2Q86UN3 420 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 CISD2Q8N5K1 135 aaKnown RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 ZNF610Q8N9Z0 462 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 ACBD4Q8NC06 268 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 AKAP1Q92667 903 aaKnown RBP eCLIP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 OPN3Q9H1Y3 402 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 CRIM1Q9NZV1 1036 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 ELF5Q9UKW6 265 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-202ENST00000372405 STARD10Q9Y365 291 aa11.92□□□□□ -0.5
PTPRF-202ENST00000372405 A0A0A6YYD4 124 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 WDR1O75083 606 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 NAT2P11245 290 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 PTGFRP43088 359 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 HLXQ14774 488 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-202ENST00000372405 LINC00303Q3SY05 128 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 NANOS1Q8WY41 292 aaKnown RBP11.91□□□□□ -0.5
PTPRF-202ENST00000372405 APOBEC3DQ96AK3 386 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-202ENST00000372405 CMBLQ96DG6 245 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 CYYR1Q96J86 154 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 RNF170Q96K19 258 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms