RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 G3V3Q6 166 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 ZIC2O95409 532 aaPredicted RBP14.31□□□□□ -0.12
COL17A1-202ENST00000369733 HIST1H1DP16402 221 aaKnown RBP14.31□□□□□ -0.12
COL17A1-202ENST00000369733 TBXA2RP21731 343 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 ASCL1P50553 236 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 SHBQ15464 509 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 ARHGAP5-AS1Q96IT6 56 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 ZNF331Q9NQX6 463 aaPredicted RBP14.31□□□□□ -0.12
COL17A1-202ENST00000369733 COL4A1P02462 1669 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 CD63P08962 238 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 G0S2P27469 103 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 TUSC1Q2TAM9 212 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 AARDQ4LEZ3 155 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 TSPAN32Q96QS1 320 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 ZNF251Q9BRH9 671 aa14.31□□□□□ -0.12
COL17A1-202ENST00000369733 A0A1W2PPH5 198 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 BCAT2O15382 392 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-202ENST00000369733 SLC35G3Q8N808 338 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 NAT6Q93015 286 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 ZNF230Q9UIE0 474 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-202ENST00000369733 FIGNL2A6NMB9 653 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 ICAM2P13598 275 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 SIGLECL1Q8N7X8 197 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 SLC39A7Q92504 469 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 ST3GAL6Q9Y274 331 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 TIMM10BQ9Y5J6 103 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 PLRG1O43660 514 aaKnown RBP14.3□□□□□ -0.12
COL17A1-202ENST00000369733 TIMM8AO60220 97 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-202ENST00000369733 WDR1O75083 606 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 IGHV3-9P01782 118 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 FAHP16930 419 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 HABP2Q14520 560 aaPredicted RBP14.3□□□□□ -0.12
COL17A1-202ENST00000369733 LANCL3Q6ZV70 420 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 CA10Q9NS85 328 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 SCN9AQ15858 1988 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 NOVA1P51513 510 aaKnown RBP14.3□□□□□ -0.12
COL17A1-202ENST00000369733 OR10P1Q8NGE3 313 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 MRPS18AQ9NVS2 196 aaKnown RBP14.3□□□□□ -0.12
COL17A1-202ENST00000369733 PISDQ9UG56 409 aa14.3□□□□□ -0.12
COL17A1-202ENST00000369733 MRM2Q9UI43 246 aaKnown RBP14.3□□□□□ -0.12
COL17A1-202ENST00000369733 COL16A1Q07092 1604 aaPredicted RBP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 AP4M1O00189 453 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 LAMTOR5O43504 91 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 MBP02144 154 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 TNFSF4P23510 183 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 CDAP32320 146 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 PPIAP62937 165 aaKnown RBP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 LSM11P83369 360 aaKnown RBP eCLIP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 LYSMD4Q5XG99 296 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 OR2A2Q6IF42 318 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 GVQW1Q8N7I0 195 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 RBMXL3Q8N7X1 1067 aaKnown RBP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 OR4C3Q8NH37 302 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 ZNF586Q9NXT0 402 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 ZNF320A2RRD8 509 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 HOXB3P14651 431 aaPredicted RBP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 RPL7L1Q6DKI1 246 aaKnown RBP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 Q7L0L9 218 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 PTP4A1Q93096 173 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 SEC11CQ9BY50 192 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 PRO1933Q9H354 126 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 WSB1Q9Y6I7 421 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 SPINT2O43291 252 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 SPRY1O43609 319 aaPredicted RBP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 RDH5Q92781 318 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 SAT2Q96F10 170 aaPredicted RBP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 FBXL17Q9UF56 701 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 RAB5AP20339 215 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 DTYMKP23919 212 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 THBS4P35443 961 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 PRICKLE4Q2TBC4 344 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 PARM1Q6UWI2 310 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.29□□□□□ -0.12
COL17A1-202ENST00000369733 OSR2Q8N2R0 312 aa14.29□□□□□ -0.12
COL17A1-202ENST00000369733 H3BP45 60 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 ONECUT2O95948 504 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 NPBWR1P48145 328 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 FAM53BQ14153 422 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 ACOT6Q3I5F7 207 aaPredicted RBP14.28□□□□□ -0.12
COL17A1-202ENST00000369733 GPA33Q99795 319 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 B3GAT1Q9P2W7 334 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 SMIM6P0DI80 62 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 COX5AP20674 150 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 ANKRD10Q9NXR5 420 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 FZD2Q14332 565 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 OR2B11Q5JQS5 317 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 LIN7CQ9NUP9 197 aaKnown RBP14.28□□□□□ -0.12
COL17A1-202ENST00000369733 MBD1Q9UIS9 605 aaPredicted RBP14.28□□□□□ -0.12
COL17A1-202ENST00000369733 GPR160Q9UJ42 338 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 POMT1Q9Y6A1 747 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 hCG_1809904A0A1W2PP81 198 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 A0A1W2PR64 198 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 A0A1W2PRV1 198 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 MED19A0JLT2 244 aaPredicted RBP14.28□□□□□ -0.12
COL17A1-202ENST00000369733 YKT6O15498 198 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 GRPP07492 148 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 NTF3P20783 257 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 PAX6P26367 422 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 RFC3P40938 356 aa14.28□□□□□ -0.12
COL17A1-202ENST00000369733 AWAT1Q58HT5 328 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms