RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 I3L521 148 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 SHOXO15266 292 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 DBHP09172 617 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 PTGFRP43088 359 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 ZNF84P51523 738 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 UBE2V2Q15819 145 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 FAM27BQ5VT28 67 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 LPCAT3Q6P1A2 487 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 GSG1LQ6UXU4 331 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 Q6ZSR3 168 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 ADAD2Q8NCV1 583 aaKnown RBP18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 OR56B1Q8NGI3 324 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 ARHGAP5-AS1Q96IT6 56 aa18.27■□□□□ 0.52
CCDC88B-203ENST00000359902 OR5H14A6NHG9 310 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 EFSO43281 561 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 DNPH1O43598 174 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 ICAM2P13598 275 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 ZNF250P15622 560 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 FAHP16930 419 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 HLA-GP17693 338 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 CALCRP30988 508 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 NTF4P34130 210 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 MRPS34P82930 218 aaKnown RBP18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 FAM189A2Q15884 450 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 MICBQ29980 383 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 FAHD2BQ6P2I3 314 aaPredicted RBP18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 ALKAL2Q6UX46 152 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 FAM89BQ8N5H3 189 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 OR5D18Q8NGL1 313 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 NPRL2Q8WTW4 380 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 MITD1Q8WV92 249 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 FAHD2AQ96GK7 314 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 URM1Q9BTM9 101 aaKnown RBP18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 PLEK2Q9NYT0 353 aa18.27■□□□□ 0.51
CCDC88B-203ENST00000359902 M0R135 149 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 MFNGO00587 321 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 NAT2P11245 290 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 TCN2P20062 427 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 M6PRP20645 277 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 ALDH3B1P43353 468 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 IL13RA1P78552 427 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 PNLIPRP3Q17RR3 467 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 RSPO4Q2I0M5 234 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 LIN54Q6MZP7 749 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 TIPARPQ7Z3E1 657 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 ZNF546Q86UE3 836 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 HOGA1Q86XE5 327 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 PNLDC1Q8NA58 520 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 OR14L1PQ8NHC6 308 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 ST8SIA4Q92187 359 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 SLC39A7Q92504 469 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 ZNF799Q96GE5 643 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 DHRS9Q9BPW9 319 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 FLVCR1Q9Y5Y0 555 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 KIAA1549Q9HCM3 1950 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 CCSO14618 274 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 RFPL3SP0C7P2 107 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 RPS27AP62979 156 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 GGNQ86UU5 652 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 SCARB1Q8WTV0 552 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 WBP1Q96G27 269 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 OCSTAMPQ9BR26 566 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 OR10A2Q9H208 303 aa18.26■□□□□ 0.51
CCDC88B-203ENST00000359902 CARD18P57730 90 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 FGL1Q08830 312 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 GK2Q14410 553 aaPredicted RBP18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 H3F3CQ6NXT2 135 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 TMEM65Q6PI78 240 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 OR6K3Q8NGY3 331 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 KCNE4Q8WWG9 221 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 PP6455Q8WZ26 134 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 SEC22AQ96IW7 307 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 GHRLQ9UBU3 117 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 PIGLQ9Y2B2 252 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 LOXL2Q9Y4K0 774 aa18.25■□□□□ 0.51
CCDC88B-203ENST00000359902 LOC105371267A0A1B0GV96 52 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 PMS2P1A4D2B8 440 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 STMND1H3BQB6 276 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 APOC1P02654 83 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 MPGP29372 298 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 VAX1Q5SQQ9 334 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 TCEAL6Q6IPX3 200 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 C6orf15Q6UXA7 325 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 DEFB123Q8N688 67 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 SPERTQ8NA61 448 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 OR51T1Q8NGJ9 327 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 TERB2Q8NHR7 220 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 MARCH1Q8TCQ1 289 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 CT55Q8WUE5 264 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 TCEAL3Q969E4 200 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 SPTSSAQ969W0 71 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 CHST5Q9GZS9 411 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 RDH8Q9NYR8 311 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 COL27A1Q8IZC6 1860 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 MUC3AQ02505 3323 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 LRRC3CA6NJW4 275 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 HPP00738 406 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 NMBP08949 121 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 AKR1C4P17516 323 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 AGTR1P30556 359 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms