RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ZNF880Q6PDB4 577 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DEFB108BQ8NET1 73 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DCBLD2Q96PD2 775 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SIGMAR1Q99720 223 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OR2D2Q9H210 308 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SLC22A13Q9Y226 551 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NPIPB9F8W1W9 429 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CD99P14209 185 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ACSM2AQ08AH3 577 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ACSM2BQ68CK6 577 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OVCA2Q8WZ82 227 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 C10orf35Q96D05 121 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NIPSNAP3BQ9BS92 247 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PCOLCE2Q9UKZ9 415 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TCRBP04435 133 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 LAP3P28838 519 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 INPP5JQ15735 1006 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF684Q5T5D7 378 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NOXRED1Q6NXP6 359 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 LYPD4Q6UWN0 246 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PUSL1Q8N0Z8 303 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DGAT2Q96PD7 388 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NTMQ9P121 344 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 LSM7Q9UK45 103 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CST4P01036 141 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CD24P25063 80 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 WBP2NLQ6ICG8 309 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DNASE1L2Q92874 299 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 A4GALTQ9NPC4 353 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DUS4LO95620 317 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SNRPNP63162 240 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DUSP2Q05923 314 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM52BQ4KMG9 183 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OR2T4Q8NH00 348 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PMCHL2Q9BQD1 86 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TK1P04183 234 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 RPL29P47914 159 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 EXOSC7Q15024 291 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OR56A3Q8NH54 315 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OR1E3Q8WZA6 343 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CSNK1G1Q9HCP0 422 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CD207Q9UJ71 328 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 RIIAD1A6NNX1 92 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 MPZL1O95297 269 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 WISP3O95389 354 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 IGHV3-48P01763 117 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SERPINA2P20848 420 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 FXYD7P58549 80 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 EFNB1P98172 346 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SFXN5Q8TD22 340 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 RNF128Q8TEB7 428 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 FLRT3Q9NZU0 649 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TESQ9UGI8 421 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 H0YL77 283 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SCGB1C2P0DMR2 95 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CSNK2A2P19784 350 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 MFAP4P55083 255 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PGGHGQ32M88 737 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 LCN15Q6UWW0 184 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 GLDNQ6ZMI3 551 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TMPPEQ6ZT21 453 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 RAX2Q96IS3 184 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF552Q9H707 407 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CLEC4EQ9ULY5 219 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 RASD1Q9Y272 281 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 MED6O75586 246 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ACTR1BP42025 376 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DMRTC2Q8IXT2 367 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OR5B3Q8NH48 314 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 WFDC6Q9BQY6 131 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 FBLN5Q9UBX5 448 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CCL27Q9Y4X3 112 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CLDN11O75508 207 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 FGF19O95750 216 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 AGFG1P52594 562 aaKnown RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 KIAA1644Q3SXP7 199 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CBLN2Q8IUK8 224 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 TP53RKQ96S44 253 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 RIMS4Q9H426 269 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 UQCC1Q9NVA1 299 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ACSM3Q53FZ2 586 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 KCTD18Q6PI47 426 aaPredicted RBP3.2□□□□□ -1.9
SYNE1-201ENST00000341594 DHRS13Q6UX07 377 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ARRDC1Q8N5I2 433 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 OR4S1Q8NGB4 309 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 C1orf198Q9H425 327 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 GSN-AS1Q9NRJ2 163 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SUSD2Q9UGT4 822 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ADAMTS5Q9UNA0 930 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 VDAC3Q9Y277 283 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NDUFB6O95139 128 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 NPY1RP25929 384 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ADPRHP54922 357 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 HIST1H3AP68431 136 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 SGCGQ13326 291 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 EXT1Q16394 746 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 ABCA11PQ4W5N1 156 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 CLCF1Q9UBD9 225 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PRAMEF27A3QJZ7 478 aa3.2□□□□□ -1.9
SYNE1-201ENST00000341594 PRAMEF25A6NGN4 478 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms