RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RAB7AP51149 207 aa7.84□□□□□ -1.15
RTN3-202ENST00000339997 LBX1P52954 281 aa7.84□□□□□ -1.15
RTN3-202ENST00000339997 MZT1Q08AG7 82 aa7.84□□□□□ -1.15
RTN3-202ENST00000339997 SPINK9Q5DT21 86 aa7.84□□□□□ -1.15
RTN3-202ENST00000339997 CST9Q5W186 159 aa7.84□□□□□ -1.15
RTN3-202ENST00000339997 H1FXQ92522 213 aaKnown RBP7.84□□□□□ -1.15
RTN3-202ENST00000339997 RGP1Q92546 391 aaPredicted RBP7.84□□□□□ -1.15
RTN3-202ENST00000339997 TRMT61AQ96FX7 289 aaKnown RBP7.84□□□□□ -1.15
RTN3-202ENST00000339997 ALKBH3Q96Q83 286 aaPredicted RBP7.84□□□□□ -1.15
RTN3-202ENST00000339997 OR5V1Q9UGF6 321 aa7.84□□□□□ -1.15
RTN3-202ENST00000339997 SMCHD1A6NHR9 2005 aa7.84□□□□□ -1.15
RTN3-202ENST00000339997 ANKUB1A6NFN9 424 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 M0R135 149 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 IGHA1P01876 353 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 CT45A6P0DMU7 189 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 CT45A5P0DMU8 189 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 CT45A7P0DMV0 189 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 CT45A8P0DMV1 189 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 CT45A9P0DMV2 189 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 B4GALT1P15291 398 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 RAB30Q15771 203 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 GUK1Q16774 197 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 CT45A2Q5DJT8 189 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 CT45A1Q5HYN5 189 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 SLC35D3Q5M8T2 416 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 HES3Q5TGS1 186 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 OPN5Q6U736 354 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 GRINAQ7Z429 371 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 OR11H7Q8NGC8 314 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 CT45A3Q8NHU0 189 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 PHYHIPQ92561 330 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 ZNF799Q96GE5 643 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 MARVELD1Q9BSK0 173 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 MIXL1Q9H2W2 232 aa7.84□□□□□ -1.16
RTN3-202ENST00000339997 GDF2Q9UK05 429 aaPredicted RBP7.84□□□□□ -1.16
RTN3-202ENST00000339997 TMEM184BQ9Y519 407 aaPredicted RBP7.84□□□□□ -1.16
RTN3-202ENST00000339997 BTAF1O14981 1849 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 A0A1W2PPE2 198 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 BLACEA4D250 179 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 BCAT2O15382 392 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 BCL2L11O43521 198 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 OR7C2O60412 319 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ZNF217O75362 1048 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 KRASP01116 189 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 HEXAP06865 529 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PATE4P0C8F1 98 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PMCHP20382 165 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 MEOX1P50221 254 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 FGF8P55075 233 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 FCRL6Q6DN72 434 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 MRM1Q6IN84 353 aaKnown RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 LPCAT3Q6P1A2 487 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 OR4D11Q8NGI4 311 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 CTDSP1Q9GZU7 261 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PBOV1Q9GZY1 135 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 BCO1Q9HAY6 547 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 AURKAIP1Q9NWT8 199 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 IL20Q9NYY1 176 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 SRPK3Q9UPE1 567 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ST3GAL6Q9Y274 331 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ZNFX1Q9P2E3 1918 aaKnown RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 PRSS37A4D1T9 235 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 G3V3Q6 166 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 DEGS1O15121 323 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 DFFBO76075 338 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 DRD1P21728 446 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PTBP1P26599 531 aaKnown RBP eCLIP7.83□□□□□ -1.165e-7■■■■□ 22.4
RTN3-202ENST00000339997 ELAVL1Q15717 326 aaKnown RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 LGALSLQ3ZCW2 172 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 WDR38Q5JTN6 314 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 RPL7L1Q6DKI1 246 aaKnown RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 ACSM6Q6P461 480 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 CBLN3Q6UW01 205 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ADAMTSL4Q6UY14 1074 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 CXorf67Q86X51 503 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 CHAC2Q8WUX2 184 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 CCDC74BQ96LY2 380 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 CCDC88CQ9P219 2028 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PRAMEF25A6NGN4 478 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 F6UZH7 168 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 TRAF3IP2O43734 574 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 FZD6O60353 706 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ZNF121P58317 390 aaPredicted RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 DHODHQ02127 395 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ZNF79Q15937 498 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PLA1AQ53H76 456 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PRAMEF5Q5TYX0 476 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PRAMEF6Q5VXH4 476 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 TOMM20LQ6UXN7 152 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PLPP6Q8IY26 295 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 C15orf54Q8N8G6 183 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 SCCPDHQ8NBX0 429 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 OR2AE1Q8NHA4 323 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 RFESDQ8TAC1 157 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 ARHGAP5-AS1Q96IT6 56 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 SSUH2Q9Y2M2 353 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 PCDHGA9Q9Y5G4 932 aaKnown RBP7.83□□□□□ -1.16
RTN3-202ENST00000339997 MEIKINA0A087WXM9 373 aa7.83□□□□□ -1.16
RTN3-202ENST00000339997 A0A1W2PPH5 198 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms