RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ZNF71Q9NQZ8 489 aaPredicted RBP11.61□□□□□ -0.55
HMGB1-202ENST00000339872 ANKRD11Q6UB99 2663 aaPredicted RBP11.61□□□□□ -0.55
HMGB1-202ENST00000339872 METTL21EPA6NDL7 271 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 BTCP35070 178 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 APLNRP35414 380 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 MOGAT2Q3SYC2 334 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 RSBN1Q5VWQ0 802 aaPredicted RBP11.61□□□□□ -0.55
HMGB1-202ENST00000339872 DUSP18Q8NEJ0 188 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 RBMX2Q9Y388 322 aaKnown RBP11.61□□□□□ -0.55
HMGB1-202ENST00000339872 CACNA1GO43497 2377 aa11.61□□□□□ -0.55
HMGB1-202ENST00000339872 A0A1W2PR80 420 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 MBD3L4A6NDZ8 208 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 MBD3L3A6NE82 208 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 MBD3L5A6NJ08 208 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 ALX3O95076 343 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 MT-ND4P03905 459 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 SLC6A1P30531 599 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 TMPRSS3P57727 454 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 GUCA2AQ02747 115 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 SF3B4Q15427 424 aaKnown RBP eCLIP11.6□□□□□ -0.551e-8■■■□□ 19.1
HMGB1-202ENST00000339872 OR8B8Q15620 311 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 CD163Q86VB7 1156 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 MBD3L2Q8NHZ7 208 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 SPSB4Q96A44 273 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 UPRTQ96BW1 309 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 PPP1R14BQ96C90 147 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 ITPKCQ96DU7 683 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 CEP295Q9C0D2 2601 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 A0A0A6YYH2 397 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 A6NJ64 397 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 TMEM14DPA8MWL7 114 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 GMDSO60547 372 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 CNOT4O95628 575 aaKnown RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 ECDO95905 644 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 AP3S2P59780 193 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 UBE2NP61088 152 aaKnown RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 DYRK1AQ13627 763 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 CNN3Q15417 329 aaKnown RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 TSC22D1Q15714 1073 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 CLVS2Q5SYC1 327 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 CRIP3Q6Q6R5 217 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 SEM1Q6ZVN7 128 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 APOBEC3DQ96AK3 386 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 C1orf147Q96MC9 270 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 C7orf50Q9BRJ6 194 aaKnown RBP11.6□□□□□ -0.55
HMGB1-202ENST00000339872 RAXQ9Y2V3 346 aa11.6□□□□□ -0.55
HMGB1-202ENST00000339872 MEIS3P1A6NDR6 274 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 WDR1O75083 606 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 NRASP01111 189 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 PRSS3P35030 304 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 RANBP1P43487 201 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 SNTB2Q13425 540 aaKnown RBP11.59□□□□□ -0.55
HMGB1-202ENST00000339872 C11orf91Q3C1V1 193 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 RTL6Q6ICC9 239 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 OR2W3Q7Z3T1 314 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 TMEM104Q8NE00 496 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 TNFAIP8L1Q8WVP5 186 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 ZMAT3Q9HA38 289 aaKnown RBP11.59□□□□□ -0.55
HMGB1-202ENST00000339872 FBLN5Q9UBX5 448 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 FAM230AA0A1W2PPH8 454 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 FIGNL2A6NMB9 653 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 BOLA2-SMG1P6H3BVE0 249 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 RBBP9O75884 186 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 TNFSF13O75888 250 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 MPIG6BO95866 241 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 NGFP01138 241 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 GSTT2BP0CG30 244 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 UBBP0CG47 229 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 PTGFRP43088 359 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 MALLQ13021 153 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 GK2Q14410 553 aaPredicted RBP11.59□□□□□ -0.55
HMGB1-202ENST00000339872 GABRA6Q16445 453 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 SLC22A6Q4U2R8 563 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 PLA1AQ53H76 456 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 KRTCAP3Q53RY4 240 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 RAB12Q6IQ22 244 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 DNM1P46Q6ZS02 220 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 MRPL21Q7Z2W9 205 aaKnown RBP11.59□□□□□ -0.55
HMGB1-202ENST00000339872 SLC30A7Q8NEW0 376 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 KCNG3Q8TAE7 436 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 SPSB1Q96BD6 273 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 CMBLQ96DG6 245 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 RNF170Q96K19 258 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 DPAGT1Q9H3H5 408 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 BANF2Q9H503 90 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 PTTG3PQ9NZH4 202 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 PROCRQ9UNN8 238 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 FAM215AQ9Y5M1 114 aa11.59□□□□□ -0.55
HMGB1-202ENST00000339872 INTS1Q8N201 2190 aaKnown RBP11.58□□□□□ -0.56
HMGB1-202ENST00000339872 ZNF816-ZNF321PA0A0X1KG74 233 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 A0A1W2PP11 408 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 ANKRD20A5PA0PJZ0 165 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 H7C417 338 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 CDC14BO60729 498 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 CRTAPO75718 401 aaPredicted RBP11.58□□□□□ -0.56
HMGB1-202ENST00000339872 SERPINA5P05154 406 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 COX5AP20674 150 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 GIFP27352 417 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 VEGFCP49767 419 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 MTCP1P56278 107 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms