RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 KLBQ86Z14 1044 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 SYS1Q8N2H4 156 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 SEMA6DQ8NFY4 1073 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 OR2G2Q8NGZ5 317 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 RNF166Q96A37 237 aaPredicted RBP13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 PELI1Q96FA3 418 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 TMEM80Q96HE8 168 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 SMR3AQ99954 134 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 ANKRD60Q9BZ19 345 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 NARFLQ9H6Q4 476 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 PPP1R3EQ9H7J1 279 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 GCM1Q9NP62 436 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 DCAF16Q9NXF7 216 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 DIMT1Q9UNQ2 313 aaKnown RBP13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 PIGLQ9Y2B2 252 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 ACANP16112 2415 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 ZNF816-ZNF321PA0A0X1KG74 233 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 A0A1B0GTI1 187 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 A0A1B0GVI7 797 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 ZNF850A8MQ14 1090 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 MTRF1O75570 445 aaKnown RBP13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 PIPP12273 146 aaPredicted RBP13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 ATP6V1B1P15313 513 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 FAHP16930 419 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 MYL12AP19105 171 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 MYF6P23409 242 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 SLC3A1Q07837 685 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 RIPPLY1Q0D2K3 151 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 ST3GAL4Q11206 333 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 AHSA2Q719I0 299 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 DOK3Q7L591 496 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 LURAP1LQ8IV03 231 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 CELF2-AS1Q8N7Q2 184 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 SPERTQ8NA61 448 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 ZNF420Q8TAQ5 688 aaPredicted RBP13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 PIGCQ92535 297 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 TIMD4Q96H15 378 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 PLCXD1Q9NUJ7 323 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 TMEM106BQ9NUM4 274 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 UFSP2Q9NUQ7 469 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 CNOT2Q9NZN8 540 aaKnown RBP13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 PSORS1C1Q9UIG5 152 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 EXOSC1Q9Y3B2 195 aaKnown RBP13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 CR1P17927 2039 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 ZANQ9Y493 2812 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 ANXA2P2A6NMY6 339 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 SYT7O43581 403 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 CST4P01036 141 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 UBCP0CG48 685 aaKnown RBP13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 GATA4P43694 442 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 CHN2P52757 468 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 NANOS3P60323 173 aaKnown RBP13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 MZT1Q08AG7 82 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 MED21Q13503 144 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 C6orf141Q5SZD1 244 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 ZDHHC23Q8IYP9 409 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 STX19Q8N4C7 294 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 KLHL36Q8N4N3 616 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 PLPP7Q8NBV4 271 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 RAB1CQ92928 201 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 C14orf119Q9NWQ9 140 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 CHCHD3Q9NX63 227 aaKnown RBP13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 FRRS1LQ9P0K9 344 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 ENPP5Q9UJA9 477 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 WIPI2Q9Y4P8 454 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 MPC1Q9Y5U8 109 aa13.42□□□□□ -0.26
CCDC28A-201ENST00000332797 LOC100289279A0A1B0GTE1 492 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 LOC107986453A0A1B0GWG9 222 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 ISPDA4D126 451 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 LRP5LA4QPB2 252 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 SLC1A7O00341 560 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 WNT9BO14905 357 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 CYB5R3P00387 301 aaPredicted RBP13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 GRPP07492 148 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 CCL1P22362 96 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 GBX2P52951 348 aaPredicted RBP13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 ALKBH1Q13686 389 aaKnown RBP13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 MPPED2Q15777 294 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 FDX2Q6P4F2 183 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 TMPRSS11AQ6ZMR5 421 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 PEG10Q86TG7 708 aaKnown RBP13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 BIVMQ86UB2 503 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 EGFL6Q8IUX8 553 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 RDH10Q8IZV5 341 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 OR14K1Q8NGZ2 314 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 ITFG2Q969R8 447 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 ITPKCQ96DU7 683 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 CNBD2Q96M20 576 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 MICU1Q9BPX6 476 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 GSX1Q9H4S2 264 aaPredicted RBP13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 FN3KRPQ9HA64 309 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 ABCB9Q9NP78 766 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 CLEC2DQ9UHP7 191 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 RAB26Q9ULW5 256 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 CAB39Q9Y376 341 aaPredicted RBP13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 V9GYS6 101 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 DYSFO75923 2080 aa13.41□□□□□ -0.26
CCDC28A-201ENST00000332797 MED13LQ71F56 2210 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 A6NIN4 97 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 A6NLC8 198 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms