RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZNF787Q6DD87 383 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OR2W3Q7Z3T1 314 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 PNPLA1Q8N8W4 532 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 PRSS3P2Q8NHM4 247 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 KIR3DX1Q9H7L2 352 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 SLC22A13Q9Y226 551 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 B3GALT5Q9Y2C3 310 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 DOK2O60496 412 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ETHE1O95571 254 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OR5G3P0C626 314 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 FAM87AP0C7U9 286 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 GLB1P16278 677 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 FKBP2P26885 142 aaKnown RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 VIPR2P41587 438 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OR1Q1Q15612 314 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OR7A5Q15622 319 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 PWWP2BQ6NUJ5 590 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 DNM1P46Q6ZS02 220 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 Q6ZVU0 165 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 LGI3Q8N145 548 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 SDR9C7Q8NEX9 313 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OR5D14Q8NGL3 314 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 NKX3-1Q99801 234 aaPredicted RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 TMEM140Q9NV12 185 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 PLEK2Q9NYT0 353 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 IL19Q9UHD0 177 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 HPP00738 406 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CHRM4P08173 479 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 SLC35E2P0CK97 266 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CCL5P13501 91 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ERVFRD-1P60508 538 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CATSPERDQ86XM0 798 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 BPIFA4PQ86YQ2 179 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 WFIKKN1Q96NZ8 548 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 SLC22A12Q96S37 553 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ATP5SQ99766 215 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 HEYLQ9NQ87 328 aaPredicted RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 CNIH4Q9P003 139 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 SLC7A7Q9UM01 511 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TRAV39A0A0B4J263 110 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 A0A0B4J2E0 115 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TRBV5-5A0A0J9YX44 114 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 A0A1B0GX12 115 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CXCL10P02778 98 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 GYPBP06028 91 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CD79AP11912 226 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CD40P25942 277 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 DCTDP32321 178 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 HIST3H3Q16695 136 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 OR5AP2Q8NGF4 316 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TMEM234Q8WY98 164 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 FBXW5Q969U6 566 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TRMT61AQ96FX7 289 aaKnown RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 PACRGQ96M98 296 aaPredicted RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 DPH1Q9BZG8 443 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 WDR76Q9H967 626 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 A0A1B0GV90 55 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 RNF222A6NCQ9 220 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 FTCDNL1E5RQL4 147 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 NKX2-2O95096 273 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 PRSS1P07477 247 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 STAG3L3P0CL85 134 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 HOXB3P14651 431 aaPredicted RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 ABCD3P28288 659 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CD70P32970 193 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 OR1D4P47884 311 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 VEGFBP49765 207 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ZNF92Q03936 586 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 GPNMBQ14956 572 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 Q5BKY6 102 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 WBP2NLQ6ICG8 309 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 PRSS45Q7RTY3 260 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ANGPTL5Q86XS5 388 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 OR11G2Q8NGC1 345 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 SPTSSAQ969W0 71 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 MS4A6EQ96DS6 147 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TOX2Q96NM4 488 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TRIB1Q96RU8 372 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 RBM24Q9BX46 236 aaKnown RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 COX11Q9Y6N1 276 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 A0A0G2JK05 382 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 PRAMEF25A6NGN4 478 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 OR7C2O60412 319 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 RPS4Y1P22090 263 aaKnown RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 CASP6P55212 293 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 POU3F1Q03052 451 aaPredicted RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 PAQR6Q6TCH4 344 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ZNF429Q86V71 674 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ADPRHL1Q8NDY3 354 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 VN1R17PQ8TDU5 208 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 STARD4Q96DR4 205 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 IL21Q9HBE4 155 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TRAPPC2LQ9UL33 140 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ANKRD36A6QL64 1941 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ANK1P16157 1881 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ZNF28P17035 718 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 NPY4RP50391 375 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ERVS71-1P61550 626 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 MPEG1Q2M385 716 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 RPS26P11Q5JNZ5 115 aaPredicted RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms