RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 MMP28Q9H239 520 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 V9GYS6 101 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 XRCC3O43542 346 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 RBBP9O75884 186 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 MRPS10P82664 201 aaKnown RBP12.44□□□□□ -0.42
C9orf3-202ENST00000297979 HGFACQ04756 655 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 Q6ZSR3 168 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 TOMM5Q8N4H5 51 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 OR4D6Q8NGJ1 314 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 LHFPL5Q8TAF8 219 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 AKAP1Q92667 903 aaKnown RBP eCLIP12.44□□□□□ -0.42
C9orf3-202ENST00000297979 CNTD2Q9H8S5 307 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 DIABLOQ9NR28 239 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 CLCF1Q9UBD9 225 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 FAM240BA0A1B0GVZ2 78 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 LINC00587B1AMM8 73 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 GABARAPH6UMI1 98 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 SRP9P49458 86 aaKnown RBP12.44□□□□□ -0.42
C9orf3-202ENST00000297979 FOXG1P55316 489 aaPredicted RBP12.44□□□□□ -0.42
C9orf3-202ENST00000297979 GPR176Q14439 515 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 PABPC1L2AQ5JQF8 200 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 OR5AS1Q8N127 324 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 PHF21AQ96BD5 680 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 SARAFQ96BY9 339 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 GMPPAQ96IJ6 420 aaPredicted RBP12.44□□□□□ -0.42
C9orf3-202ENST00000297979 SCNM1Q9BWG6 230 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 RNF121Q9H920 327 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 ZNF224Q9NZL3 707 aa12.44□□□□□ -0.42
C9orf3-202ENST00000297979 PTPRZ1P23471 2315 aaPredicted RBP12.43□□□□□ -0.42
C9orf3-202ENST00000297979 A0A096LPE4 126 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 A0A1W2PPZ6 126 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 THBS4P35443 961 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 SIAH3Q8IW03 269 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 DUSP18Q8NEJ0 188 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 GCDHQ92947 438 aaPredicted RBP12.43□□□□□ -0.42
C9orf3-202ENST00000297979 PRSS50Q9UI38 385 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 ARHGAP21Q5T5U3 1957 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 GGT3PA6NGU5 568 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 LDLRAD4O15165 306 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 GATCO43716 136 aaKnown RBP12.43□□□□□ -0.42
C9orf3-202ENST00000297979 WISP2O76076 250 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 LCATP04180 440 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 FAM157BP0CG42 384 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 ZNF93P35789 620 aaPredicted RBP12.43□□□□□ -0.42
C9orf3-202ENST00000297979 GDNFP39905 211 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 MTFR2Q6P444 385 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 PLET1Q6UQ28 207 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 FCAMRQ8WWV6 532 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 TAAR6Q96RI8 345 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 ATG5Q9H1Y0 275 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 NARFLQ9H6Q4 476 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 FREM1Q5H8C1 2179 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 NUPL2O15504 423 aaKnown RBP12.43□□□□□ -0.42
C9orf3-202ENST00000297979 SS18L1O75177 396 aaPredicted RBP12.43□□□□□ -0.42
C9orf3-202ENST00000297979 GABRA1P14867 456 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 BIVMQ86UB2 503 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 OR52I2Q8NH67 350 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 PTX4Q96A99 478 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 C10orf35Q96D05 121 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 TRIB1Q96RU8 372 aa12.43□□□□□ -0.42
C9orf3-202ENST00000297979 CIB4A0PJX0 185 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 CENPXA8MT69 81 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 G0S2P27469 103 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 OR3A2P47893 321 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 FBXW9Q5XUX1 488 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 Q6ZS92 163 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 CPEB3Q8NE35 698 aaKnown RBP12.42□□□□□ -0.42
C9orf3-202ENST00000297979 PP6455Q8WZ26 134 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 REEP6Q96HR9 211 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 NLKQ9UBE8 527 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 PIGLQ9Y2B2 252 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 CUL9Q8IWT3 2517 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 ORC5O43913 435 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 KDM4BO94953 1096 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 ALDOBP05062 364 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 HCKP08631 526 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 FAHP16930 419 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 MPGP29372 298 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 KLF9Q13886 244 aaPredicted RBP12.42□□□□□ -0.42
C9orf3-202ENST00000297979 WDR73Q6P4I2 378 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 FGD2Q7Z6J4 655 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 GLCCI1Q86VQ1 547 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.42□□□□□ -0.42
C9orf3-202ENST00000297979 OR2AE1Q8NHA4 323 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 SPACA1Q9HBV2 294 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 ZNF391Q9UJN7 358 aa12.42□□□□□ -0.42
C9orf3-202ENST00000297979 DHRS7CA6NNS2 312 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 HLA-HP01893 362 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 PDGFAP04085 211 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 PTHLHP12272 177 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 RAB6AP20340 208 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 SLC6A1P30531 599 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 C7orf50Q9BRJ6 194 aaKnown RBP12.41□□□□□ -0.42
C9orf3-202ENST00000297979 CHST5Q9GZS9 411 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 SSUH2Q9Y2M2 353 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 LOC400499M0QZD8 3231 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 IGKV1-9A0A0C4DH69 117 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 ZNHIT1O43257 154 aa12.41□□□□□ -0.42
C9orf3-202ENST00000297979 TAGLN2P37802 199 aaKnown RBP12.41□□□□□ -0.42
C9orf3-202ENST00000297979 DYRK1AQ13627 763 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms