RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ALKBH3Q96Q83 286 aaPredicted RBP21■□□□□ 0.95
TRIM54-201ENST00000296098 CST11Q9H112 138 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 TMEM38BQ9NVV0 291 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 ZNF224Q9NZL3 707 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 BOKQ9UMX3 212 aaPredicted RBP21■□□□□ 0.95
TRIM54-201ENST00000296098 PIGLQ9Y2B2 252 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 MTRF1O75570 445 aaKnown RBP21■□□□□ 0.95
TRIM54-201ENST00000296098 CRYGSP22914 178 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 NTF4P34130 210 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 CD96P40200 585 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 SEC61A1P61619 476 aaKnown RBP21■□□□□ 0.95
TRIM54-201ENST00000296098 DTX1Q86Y01 620 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 ZDHHC22Q8N966 263 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 CPT1CQ8TCG5 803 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 C10orf35Q96D05 121 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 LRFN1Q9P244 771 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 GHRLQ9UBU3 117 aa21■□□□□ 0.95
TRIM54-201ENST00000296098 HMSDA8MTL9 139 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 MCRIP1C9JLW8 97 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 DLSTP36957 453 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 DMRTC1Q5HYR2 192 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 PLA2G2CQ5R387 149 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 OR52H1Q8NGJ2 320 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 OR5D18Q8NGL1 313 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 ANAPC10Q9UM13 185 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 LOC100509620A0A075B734 347 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 A0A1W2PNU3 283 aaPredicted RBP20.99■□□□□ 0.95
TRIM54-201ENST00000296098 SYNGR3O43761 229 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 PTGFRP43088 359 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 ALDH3B1P43353 468 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 FOXO1Q12778 655 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 UBE2V2Q15819 145 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 PNLIPRP3Q17RR3 467 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 SNAI3Q3KNW1 292 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 CDCP2Q5VXM1 449 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 CRIP3Q6Q6R5 217 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 DRAM2Q6UX65 266 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 STEAP2Q8NFT2 490 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 MRGPRFQ96AM1 343 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 MAB21L2Q9Y586 359 aa20.99■□□□□ 0.95
TRIM54-201ENST00000296098 FXYD6-FXYD2A0A087WZ82 144 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 LINC00862A6NCI5 91 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 CFDP00746 253 aaPredicted RBP20.98■□□□□ 0.95
TRIM54-201ENST00000296098 HLA-AP01891 365 aaKnown RBP20.98■□□□□ 0.95
TRIM54-201ENST00000296098 IFNA6P05013 189 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 HOXD11P31277 338 aaPredicted RBP20.98■□□□□ 0.95
TRIM54-201ENST00000296098 OR3A3P47888 321 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 GFRA1P56159 465 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 RPS27AP62979 156 aaKnown RBP20.98■□□□□ 0.95
TRIM54-201ENST00000296098 SCRN3Q0VDG4 424 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 TMEM164Q5U3C3 297 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 SPINK14Q6IE38 97 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 JMJD6Q6NYC1 403 aaPredicted RBP20.98■□□□□ 0.95
TRIM54-201ENST00000296098 SLC25A42Q86VD7 318 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 CPNE4Q96A23 557 aaPredicted RBP20.98■□□□□ 0.95
TRIM54-201ENST00000296098 FXYD6Q9H0Q3 95 aa20.98■□□□□ 0.95
TRIM54-201ENST00000296098 C21orf140B9A014 251 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 STMND1H3BQB6 276 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 MFNGO00587 321 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 ARPC5O15511 151 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 B4GALT1P15291 398 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 CD34P28906 385 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 CLDN15P56746 228 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 CLVS2Q5SYC1 327 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 OR4K15Q8NH41 348 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 GPR87Q9BY21 358 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 PCDHGA1Q9Y5H4 931 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 LIPCP11150 499 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 NAT2P11245 290 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 FCGR2AP12318 317 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 TMEM50BP56557 158 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 RIPPLY1Q0D2K3 151 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 LY6G6FQ5SQ64 297 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 ZNF774Q6NX45 483 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 OR1F12Q8NHA8 337 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 ARHGAP5-AS1Q96IT6 56 aa20.97■□□□□ 0.95
TRIM54-201ENST00000296098 MUC3AQ02505 3323 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 DOCK10Q96BY6 2186 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 RPS10-NUDT3A0A1W2PQS6 291 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 OR6C65A6NJZ3 312 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 LEUTXA8MZ59 168 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 CYTIPO60759 359 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 PMP2P02689 132 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 NAT1P18440 290 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 GMFBP60983 142 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 ACTBL2Q562R1 376 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 CLLU1Q5K131 121 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 SFRP5Q5T4F7 317 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 ABHD17BQ5VST6 288 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 THOC7Q6I9Y2 204 aaKnown RBP20.96■□□□□ 0.95
TRIM54-201ENST00000296098 LYG2Q86SG7 212 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 FAM89BQ8N5H3 189 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 OR51T1Q8NGJ9 327 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 HAS2Q92819 552 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 SGK3Q96BR1 496 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 FAM173AQ9BQD7 235 aa20.96■□□□□ 0.95
TRIM54-201ENST00000296098 NOP16Q9Y3C1 178 aaKnown RBP20.96■□□□□ 0.95
TRIM54-201ENST00000296098 OR2AT4A6NND4 320 aa20.95■□□□□ 0.94
TRIM54-201ENST00000296098 RAD51DO75771 328 aa20.95■□□□□ 0.94
TRIM54-201ENST00000296098 MGMTP16455 207 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms