RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 DOK3Q7L591 496 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 PLSCR3Q9NRY6 295 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 HSBP1O75506 76 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 EIF1P41567 113 aaKnown RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 LMAN1LQ9HAT1 526 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 SLC17A4Q9Y2C5 497 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 KIAA1324LA8MWY0 1029 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 B4GALNT1Q00973 533 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 IHHQ14623 411 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 TINAGL1Q9GZM7 467 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 GLAP06280 429 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 MEOX1P50221 254 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 KHDC1LQ5JSQ8 128 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 SIGIRRQ6IA17 410 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 RBM45Q8IUH3 476 aaKnown RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 SLC16A11Q8NCK7 471 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 CMTM3Q96MX0 182 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 C19orf53Q9UNZ5 99 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 GREB1Q4ZG55 1949 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 ZNF646O15015 1829 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 OR4E1P0C645 316 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 SLC25A4P12235 298 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 IRS1P35568 1242 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 SNRPEP62304 92 aaKnown RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 FFAR4Q5NUL3 377 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 OR5D13Q8NGL4 314 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 LRRC3CA6NJW4 275 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 GATCO43716 136 aaKnown RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 GRPP07492 148 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 PVRP15151 417 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 Q3ZCU0 254 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 PYCR3Q53H96 274 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 THEM4Q5T1C6 240 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 ABLIM2Q6H8Q1 611 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 CHAC2Q8WUX2 184 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 PPP1R1CQ8WVI7 109 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 SMIM19Q96E16 107 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 WDR89Q96FK6 387 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 SLC46A1Q96NT5 459 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 CALHM2Q9HA72 323 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 PCDHGA9Q9Y5G4 932 aaKnown RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 FITM1A5D6W6 292 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 ZNF814B7Z6K7 855 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 XRCC2O43543 280 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 ELOBQ15370 118 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 DYSFO75923 2080 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 C5orf52A6NGY3 159 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 GALR2O43603 387 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 GLI4P10075 376 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 ETV3LQ6ZN32 361 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 CMTM4Q8IZR5 234 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 SH2D1BO14796 132 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 STUMQ69YW2 141 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 DHRS7BQ6IAN0 325 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 PAQR6Q6TCH4 344 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 ERGIC1Q969X5 290 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 NXPE3Q969Y0 559 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 FGF20Q9NP95 211 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-201ENST00000295550 TIMM9Q9Y5J7 89 aa8.94□□□□□ -0.98
COL6A3-201ENST00000295550 DOCK4Q8N1I0 1966 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 CA3P07451 260 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 EN2P19622 333 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 OR2B11Q5JQS5 317 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 BAP18Q8IXM2 172 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 LINC00615Q96LM1 132 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 EGLN1Q9GZT9 426 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TMEM127O75204 238 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 CHRM2P08172 466 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 PSMB2P49721 201 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TIAL1Q01085 375 aaKnown RBP eCLIP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TMPRSS11FQ6ZWK6 438 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 SLCO1B1Q9Y6L6 691 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 YIF1AO95070 293 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 MT-ATP6P00846 226 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 RPLP1P05386 114 aaKnown RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 CTSLP07711 333 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 LIMS3P0CW19 117 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 LIMS4P0CW20 117 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 SPNP16150 400 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 ERV3-1Q14264 604 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TCTN3Q6NUS6 607 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 ANKRD33Q7Z3H0 272 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 UBE3DQ7Z6J8 389 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TCTEX1D1Q8N7M0 179 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TMEM37Q8WXS4 190 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 PSENENQ9NZ42 101 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 SCN10AQ9Y5Y9 1956 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 C1orf140Q5VVS0 124 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 C12orf73Q69YU5 71 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 LRFN3Q9BTN0 628 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 CLEC18AA5D8T8 446 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 SDCBPO00560 298 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 SMIM6P0DI80 62 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 PRTGQ2VWP7 1150 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 FAM219BQ5XKK7 198 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 CLEC18CQ8NCF0 446 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 WDFY2Q96P53 400 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 FAAP24Q9BTP7 215 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 A0A0A6YYD5 115 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms