RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 CXCR1P25024 350 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 SCAND1P57086 179 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 CCL20P78556 96 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 METRNLQ641Q3 311 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 SLC22A25Q6T423 547 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 SGPP2Q8IWX5 399 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 OR5T1Q8NG75 326 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 OR2G3Q8NGZ4 309 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 OR4C3Q8NH37 302 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 SPHK2Q9NRA0 654 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 HIF3AQ9Y2N7 669 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 STARD10Q9Y365 291 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 RHBDD3Q9Y3P4 386 aa9.08□□□□□ -0.96
CLDN1-201ENST00000295522 M0R143 59 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ARPC3O15145 178 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ZNF823P16415 610 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 PMELP40967 661 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SLC6A9P48067 706 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 PLAURQ03405 335 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ZNF260Q3ZCT1 412 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ZNF684Q5T5D7 378 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 TMEM217Q8N7C4 229 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SLC35G3Q8N808 338 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 RBM18Q96H35 190 aaKnown RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ZNF764Q96H86 408 aaPredicted RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ABHD14AQ9BUJ0 271 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 VN1R3Q9BXE9 311 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SLC17A5Q9NRA2 495 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 COLEC10Q9Y6Z7 277 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ATG2BQ96BY7 2078 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ELOA3CA0A087WX78 387 aaPredicted RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 TRBV6-7A0A0A0MS04 114 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ZFP92A6NM28 416 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 A8MWP6 167 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 DFFBO76075 338 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 LBHQ53QV2 105 aaPredicted RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 OTOSQ8NHW6 89 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 MRPL24Q96A35 216 aaKnown RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 TMEM230Q96A57 120 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 MALSU1Q96EH3 234 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ZNF558Q96NG5 402 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 CABLES2Q9BTV7 478 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ELOVL1Q9BW60 279 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SLC25A31Q9H0C2 315 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 AK3Q9UIJ7 227 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 POLR1DQ9Y2S0 133 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 UNC80Q8N2C7 3258 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 FAM221AA4D161 298 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 MEGF11A6BM72 1044 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 RBFOX3A6NFN3 312 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 A6NIZ1 184 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SOCS1O15524 211 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 C8AP07357 584 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SLC2A1P11166 492 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 PVRP15151 417 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 RAP1BP61224 184 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 RPL23AP62750 156 aaKnown RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 PMS2P11Q13670 270 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 HNF4GQ14541 408 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 WDR25Q64LD2 544 aaPredicted RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ASPHD2Q6ICH7 369 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 FAHD2BQ6P2I3 314 aaPredicted RBP9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SULF2Q8IWU5 870 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 COMMD1Q8N668 190 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 ZNF248Q8NDW4 579 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 TMEM52Q8NDY8 209 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 TMEM37Q8WXS4 190 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 FAHD2AQ96GK7 314 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SCGB3A2Q96PL1 93 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 TSPAN32Q96QS1 320 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 OR8B4Q96RC9 309 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 LRFN1Q9P244 771 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 SLC7A11Q9UPY5 501 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 LRP12Q9Y561 859 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 WSB1Q9Y6I7 421 aa9.07□□□□□ -0.96
CLDN1-201ENST00000295522 DOCK9Q9BZ29 2069 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 SYT7O43581 403 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 TSPO2Q5TGU0 170 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 MEX3BQ6ZN04 569 aaKnown RBP9.06□□□□□ -0.96
CLDN1-201ENST00000295522 MED25Q71SY5 747 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 HOGA1Q86XE5 327 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 KTI12Q96EK9 354 aaPredicted RBP9.06□□□□□ -0.96
CLDN1-201ENST00000295522 SNHG12Q9BXW3 62 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 NMNAT2Q9BZQ4 307 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 DAPP1Q9UN19 280 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 MRPS2Q9Y399 296 aaKnown RBP9.06□□□□□ -0.96
CLDN1-201ENST00000295522 A0A087WUJ7 227 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 LOC101059948A0A1B0GTJ6 334 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 HRKO00198 91 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 TCF21O43680 179 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 ZNF20P17024 532 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 CSRP1P21291 193 aaKnown RBP9.06□□□□□ -0.96
CLDN1-201ENST00000295522 SNU13P55769 128 aaKnown RBP9.06□□□□□ -0.96
CLDN1-201ENST00000295522 EGR3Q06889 387 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 ZIC1Q15915 447 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 ABCA11PQ4W5N1 156 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 TMEM268Q5VZI3 342 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 GLIPR1L1Q6UWM5 242 aa9.06□□□□□ -0.96
CLDN1-201ENST00000295522 C1QL4Q86Z23 238 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms