RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 DOCK3Q8IZD9 2030 aa16.58■□□□□ 0.24
PCDH1-201ENST00000287008 B4E171 279 aa16.58■□□□□ 0.24
PCDH1-201ENST00000287008 SPRY1O43609 319 aaPredicted RBP16.58■□□□□ 0.24
PCDH1-201ENST00000287008 TSPAN7P41732 249 aa16.58■□□□□ 0.24
PCDH1-201ENST00000287008 VSTM2LQ96N03 204 aa16.58■□□□□ 0.24
PCDH1-201ENST00000287008 MYOZ1Q9NP98 299 aaPredicted RBP16.58■□□□□ 0.24
PCDH1-201ENST00000287008 BIN3Q9NQY0 253 aa16.58■□□□□ 0.24
PCDH1-201ENST00000287008 COL24A1Q17RW2 1714 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 ACTL6AO96019 429 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 NPBWR1P48145 328 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 TESK1Q15569 626 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 FAM219BQ5XKK7 198 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 CELF2-AS1Q8N7Q2 184 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 RNF141Q8WVD5 230 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 CDC14BO60729 498 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 TMEM127O75204 238 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 SNAPINO95295 136 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 MC2RQ01718 297 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 CXorf67Q86X51 503 aaPredicted RBP16.57■□□□□ 0.24
PCDH1-201ENST00000287008 GINS3Q9BRX5 216 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 WDR54Q9H977 334 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 NTN4Q9HB63 628 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 CCSO14618 274 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 PPIHO43447 177 aaKnown RBP16.57■□□□□ 0.24
PCDH1-201ENST00000287008 HABP2Q14520 560 aaPredicted RBP16.57■□□□□ 0.24
PCDH1-201ENST00000287008 SPANXN5Q5MJ07 72 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 CD276Q5ZPR3 534 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 KCNIP4Q6PIL6 250 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 TMEM30CPA0ZSE6 113 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 SFTPCP11686 197 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 PNLIPP16233 465 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 S100A11P31949 105 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 MCCD1P59942 119 aaPredicted RBP16.57■□□□□ 0.24
PCDH1-201ENST00000287008 PSG6Q00889 435 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 ZNF251Q9BRH9 671 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 RNF150Q9ULK6 438 aa16.57■□□□□ 0.24
PCDH1-201ENST00000287008 CD3EP07766 207 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 KLF3P57682 345 aaPredicted RBP16.56■□□□□ 0.24
PCDH1-201ENST00000287008 UBE2KP61086 200 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 FAM27D1Q5T7N8 215 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 TMEM268Q5VZI3 342 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 TSEN54Q7Z6J9 526 aaKnown RBP16.56■□□□□ 0.24
PCDH1-201ENST00000287008 EXTL1Q92935 676 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 NARFLQ9H6Q4 476 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 KIAA1217Q5T5P2 1943 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 AKAP6Q13023 2319 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 A0A1W2PQD3 144 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 AQP7P3A6NL99 342 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 SSX4O60224 188 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 PI3P19957 117 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 EVX1P49640 407 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 SOHLH1Q5JUK2 328 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 ADPRHL1Q8NDY3 354 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 CCL17Q92583 94 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 SIRT5Q9NXA8 310 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 FOXJ3Q9UPW0 622 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 TRAPPC4Q9Y296 219 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 FER1L6Q2WGJ9 1857 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 A0A0B4J203 849 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 OR6C68A6NDL8 312 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 ZIC2O95409 532 aaPredicted RBP16.56■□□□□ 0.24
PCDH1-201ENST00000287008 SMIM18P0DKX4 95 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 EPXP11678 715 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 HLA-DOBP13765 273 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 CA6P23280 308 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 PRR7Q8TB68 274 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 GPX8Q8TED1 209 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 DERL3Q96Q80 235 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 NEU3Q9UQ49 428 aa16.56■□□□□ 0.24
PCDH1-201ENST00000287008 PUS1Q9Y606 427 aaKnown RBP eCLIP16.56■□□□□ 0.24
PCDH1-201ENST00000287008 CACNA1IQ9P0X4 2223 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 TCRBV16S1A1N1A0A5B0 115 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 TRAV1-2A0A0B4J238 106 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 PLPP3O14495 311 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 RTN4IP1Q8WWV3 396 aaPredicted RBP16.55■□□□□ 0.24
PCDH1-201ENST00000287008 TRMT61AQ96FX7 289 aaKnown RBP16.55■□□□□ 0.24
PCDH1-201ENST00000287008 DOK1Q99704 481 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 HRH1P35367 487 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 CDK5Q00535 292 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 FAM58AQ8N1B3 248 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 C17orf78Q8N4C9 275 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 SLC7A6Q92536 515 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 C4orf45Q96LM5 186 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 ZNF416Q9BWM5 594 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 CACFD1Q9UGQ2 172 aa16.55■□□□□ 0.24
PCDH1-201ENST00000287008 M0QZ24 198 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 CYR61O00622 381 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 DHRS3O75911 302 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 CD3DP04234 171 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 MAGEA5P43359 124 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 SLC37A1P57057 533 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 STARD6P59095 220 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 GPNMBQ14956 572 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 NAA40Q86UY6 237 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 UBAC2Q8NBM4 344 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 TRIP11Q15643 1979 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 ACKR3P25106 362 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 PCBP3P57721 371 aaKnown RBP16.54■□□□□ 0.24
PCDH1-201ENST00000287008 C21orf58P58505 322 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 OR10P1Q8NGE3 313 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms