RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SLC22A4Q9H015 551 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 ETV7Q9Y603 341 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 ANGPTL7O43827 346 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 APOC1P02654 83 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 FAM157BP0CG42 384 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 GSK3AP49840 483 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 MMP15P51511 669 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 FAM3AP98173 230 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 TMEM255AQ5JRV8 349 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 ZNF529Q6P280 563 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 ANKRD16Q6P6B7 361 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 MRPS28Q9Y2Q9 187 aaKnown RBP14.3□□□□□ -0.12
USP4-201ENST00000265560 FAM215AQ9Y5M1 114 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 GGT3PA6NGU5 568 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 C3orf80F5H4A9 247 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 SFRP4Q6FHJ7 346 aaPredicted RBP14.29□□□□□ -0.12
USP4-201ENST00000265560 CHST4Q8NCG5 386 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 RAB40AQ8WXH6 277 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 GPR137Q96N19 417 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 METTL17Q9H7H0 456 aaPredicted RBP14.29□□□□□ -0.12
USP4-201ENST00000265560 V9GYS6 101 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 SPRY1O43609 319 aaPredicted RBP14.29□□□□□ -0.12
USP4-201ENST00000265560 MPIG6BO95866 241 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 VEGFCP49767 419 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 C1orf100Q5SVJ3 147 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 CRIP3Q6Q6R5 217 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 NKAIN3Q8N8D7 197 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 PTTG3PQ9NZH4 202 aa14.29□□□□□ -0.12
USP4-201ENST00000265560 PKDREJQ9NTG1 2253 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 TRAV6A0A075B6T7 132 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 LOC390937A0A1W2PQ73 354 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 TNFSF13O75888 250 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 PITPNAQ00169 270 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 PLP2Q04941 152 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 GK2Q14410 553 aaPredicted RBP14.28□□□□□ -0.12
USP4-201ENST00000265560 PGAP1Q75T13 922 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 WNT2BQ93097 391 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 BEX2Q9BXY8 128 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 BEX1Q9HBH7 125 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 TINAGQ9UJW2 476 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 ING4Q9UNL4 249 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 IGHV3-64DA0A0J9YX35 117 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 TMEM235A6NFC5 223 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 WIPF3A6NGB9 483 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 XRCC3O43542 346 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 GMDSO60547 372 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 LILRA1O75019 489 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 MTRF1O75570 445 aaKnown RBP14.28□□□□□ -0.12
USP4-201ENST00000265560 PTBP1P26599 531 aaKnown RBP eCLIP14.28□□□□□ -0.12
USP4-201ENST00000265560 WNT5AP41221 380 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 RSBN1Q5VWQ0 802 aaPredicted RBP14.28□□□□□ -0.12
USP4-201ENST00000265560 OR8S1Q8NH09 359 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 SETD6Q8TBK2 473 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 SMIM4Q8WVI0 70 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 STARD4Q96DR4 205 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 DIABLOQ9NR28 239 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 AHRRA9YTQ3 701 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 HNRNPCP07910 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
USP4-201ENST00000265560 KRTAP27-1Q3LI81 207 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 OLFML2AQ68BL7 652 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 FCAMRQ8WWV6 532 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 POM121L2Q96KW2 1035 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 ASF1BQ9NVP2 202 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 NKIRAS2Q9NYR9 191 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 CACNG2Q9Y698 323 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 ZFYVE26Q68DK2 2539 aa14.28□□□□□ -0.12
USP4-201ENST00000265560 SPTAN1Q13813 2472 aaKnown RBP14.27□□□□□ -0.12
USP4-201ENST00000265560 SERPINA2P20848 420 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 GIFP27352 417 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 MTCP1P56278 107 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 ERVS71-1P61550 626 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 RIPPLY1Q0D2K3 151 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 CXorf67Q86X51 503 aaPredicted RBP14.27□□□□□ -0.12
USP4-201ENST00000265560 OR56B2PQ8NGI1 322 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 TNFAIP8L1Q8WVP5 186 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 UPRTQ96BW1 309 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 SNRNP40Q96DI7 357 aaKnown RBP14.27□□□□□ -0.12
USP4-201ENST00000265560 NEURL2Q9BR09 285 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 CHST5Q9GZS9 411 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 RBFOX1Q9NWB1 397 aaKnown RBP14.27□□□□□ -0.12
USP4-201ENST00000265560 MCUBQ9NWR8 336 aa14.27□□□□□ -0.12
USP4-201ENST00000265560 IGKV1-27A0A075B6S5 117 aa14.27□□□□□ -0.13
USP4-201ENST00000265560 A8MV72 311 aaPredicted RBP14.27□□□□□ -0.13
USP4-201ENST00000265560 CRTAPO75718 401 aaPredicted RBP14.27□□□□□ -0.13
USP4-201ENST00000265560 UBE2NP61088 152 aaKnown RBP14.27□□□□□ -0.13
USP4-201ENST00000265560 NSUN5P2Q63ZY6 315 aa14.27□□□□□ -0.13
USP4-201ENST00000265560 Q6ZT83 130 aa14.27□□□□□ -0.13
USP4-201ENST00000265560 RFPL4BQ6ZWI9 263 aa14.27□□□□□ -0.13
USP4-201ENST00000265560 MINDY2Q8NBR6 621 aa14.27□□□□□ -0.13
USP4-201ENST00000265560 A0A0B4J293 547 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 hCG_38984A0A1B0GV85 526 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 ZNF850A8MQ14 1090 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 CRYABP02511 175 aaKnown RBP14.26□□□□□ -0.13
USP4-201ENST00000265560 APLNRP35414 380 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 ARR3P36575 388 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 GUSBP1Q15486 140 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 NRN1LQ496H8 165 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 MOB3CQ70IA8 216 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 SLC30A7Q8NEW0 376 aa14.26□□□□□ -0.13
USP4-201ENST00000265560 UBASH3BQ8TF42 649 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms